lgpdevtools / sraX
Systematic resistome analysis
☆10Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for sraX
- software to identify primers that can distinguish genomes☆20Updated this week
- MetagenOmic read Re-Assigner and abundance quantifier☆17Updated 4 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆20Updated last year
- MAGScoT - a MAG scoring and refinement tool☆28Updated last month
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆24Updated 7 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆17Updated last year
- Strain Prediction and Analysis with Representative SEquence☆18Updated last week
- Targeted Detection and Reconstruction of Plasmids☆19Updated 6 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆19Updated 4 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Microbial agile accurate SNP Typer☆29Updated 10 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆16Updated 8 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 4 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated last week
- Strain-level haplotyping for metagenomes with short or long-reads.☆39Updated 4 months ago
- ☆10Updated 4 years ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 6 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Finding regions of similarity between plasmids☆16Updated 2 years ago
- Calculate assocations between genes and traits☆19Updated 2 weeks ago
- Plasmid analysis using rearrangement distances☆29Updated 2 months ago
- ☆16Updated 4 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆28Updated 2 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆23Updated this week
- TAXnomic Profile Aggregation and STAndardisation☆34Updated last week
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆22Updated last month