labsquare / FastQt
FastQC port to Qt5: A quality control tool for high throughput sequence data.
☆111Updated 4 years ago
Alternatives and similar repositories for FastQt:
Users that are interested in FastQt are comparing it to the libraries listed below
- Structural variant detection and association testing☆104Updated last year
- simple viewer for variant call format using htslib☆32Updated 8 years ago
- CutePeaks is a standalone Sanger trace viewer steered by a modern and user-friendly UI.☆43Updated 2 years ago
- MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)☆25Updated 2 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆86Updated 5 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆101Updated 4 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆126Updated 2 years ago
- GCLib - Genomic C++ library of reusable code for bioinformatics projects☆33Updated 2 weeks ago
- A tool set for short variant discovery in genetic sequence data.☆194Updated 3 years ago
- LAMBDA – the Local Aligner for Massive Biological DatA☆77Updated 4 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆180Updated 5 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆89Updated 4 years ago
- PAired-eND Assembler for DNA sequences☆130Updated 4 years ago
- Platypus Variant Caller☆105Updated 6 months ago
- Tips for Nextflow and cheatsheet for channel operation☆71Updated 5 months ago
- Short-read sequencing tools☆151Updated this week
- Population-scale genotyping using pangenome graphs☆177Updated last week
- Detecting contamination in NGS data and multi-species analysis☆67Updated 2 months ago
- A standalone and free application to explore genetics variations from VCF file☆103Updated 8 months ago
- Maximum likelihood demultiplexing☆46Updated last year
- Fast multi-line FASTA/Q reader in several programming languages☆174Updated 3 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆106Updated 2 years ago
- Python3 scripts to manipulate FASTA and FASTQ files☆70Updated 2 months ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆120Updated last year
- A collection of command line tools for working with sequencing data☆51Updated this week
- An efficient FASTQ manipulation suite☆138Updated 4 years ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆103Updated last week
- A program to detect denovo-variants using next-generation sequencing data.☆50Updated 4 years ago