labsquare / CuteVCFLinks
simple viewer for variant call format using htslib
☆32Updated 8 years ago
Alternatives and similar repositories for CuteVCF
Users that are interested in CuteVCF are comparing it to the libraries listed below
Sorting:
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 6 months ago
- Python3 scripts to manipulate FASTA and FASTQ files☆71Updated 7 months ago
- Structural Variant Index☆75Updated 10 months ago
- rapidly rid reads of horrid humans☆15Updated 3 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- CutePeaks is a standalone Sanger trace viewer steered by a modern and user-friendly UI.☆45Updated 3 months ago
- Webin command line submission program.☆34Updated last month
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆70Updated 6 years ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated 3 weeks ago
- Graph based multi genome aligner☆48Updated 4 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 10 months ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Highly customizable, ambiguity-aware dotplots for visual sequence analyses☆92Updated 4 months ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated last year
- Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences☆62Updated 2 months ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆69Updated 11 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆22Updated last week
- k-mer counting software☆39Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Params validation plugin for Nextflow pipelines☆48Updated last year
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Yet Another Chimeric Read Detector☆81Updated 11 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆86Updated 11 months ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- ☆46Updated 5 years ago
- MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a …☆36Updated 3 years ago