labsquare / CuteVCFLinks
simple viewer for variant call format using htslib
☆32Updated 8 years ago
Alternatives and similar repositories for CuteVCF
Users that are interested in CuteVCF are comparing it to the libraries listed below
Sorting:
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Updated 2 years ago
- Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences☆57Updated 9 months ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆48Updated 4 years ago
- PacBio BAM C++ library☆21Updated last year
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- A tool kit to manage many variant on desktop computer☆13Updated this week
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A Python library for reading and writing PacBio® data files☆39Updated 4 months ago
- Graph based multi genome aligner☆47Updated 3 years ago
- Structural Variant Index☆74Updated 6 months ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆103Updated 5 months ago
- ☆47Updated 5 years ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- Components of genome sequence assembly tools☆21Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 3 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 11 months ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- ☆49Updated 7 months ago
- ☆80Updated 3 months ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated this week
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- A fork of exonerate: a generic tool for sequence alignment☆67Updated last year
- In-silico PCR, primer design and padlock design for in-situ sequencing☆51Updated 2 weeks ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 2 weeks ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆75Updated 4 years ago