Alternatives and similar repositories for DeepExplain:

Users that are interested in DeepExplain are comparing it to the libraries listed below

• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆30Updated 3 years ago
• jmschrei / tfmodisco-lite
  A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
  ☆72Updated 2 months ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆35Updated last week
• GreiffLab / immuneSIM
  ☆38Updated last year
• saketkc / pyseqlogo
  Python package to plot sequence logos
  ☆29Updated last year
• kipoi / kipoiseq
  Standard set of data-loaders for training and making predictions for DNA sequence-based models.
  ☆81Updated 8 months ago
• gagneurlab / MMSplice_MTSplice
  Tissue-specific variant effect predictions on splicing
  ☆42Updated last year
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• Hughes-Genome-Group / deepC
  A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence
  ☆33Updated 11 months ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆67Updated this week
• kundajelab / MPRA-DragoNN
  Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…
  ☆12Updated 3 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆47Updated 2 weeks ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆43Updated 2 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆45Updated 5 years ago
• vagarwal87 / saluki_paper
  Saluki, a method to predict mRNA half-lives from sequence
  ☆24Updated 2 years ago
• arefeen / DeepPASTA
  ☆10Updated 4 years ago
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆29Updated 2 years ago
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated last week
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• kundajelab / simdna
  A python library for creating simulated regulatory DNA sequences
  ☆38Updated 2 years ago
• kundajelab / ChromDragoNN
  Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…
  ☆44Updated 3 years ago
• mnielLab / netTCR
  predicting peptide and TCR interaction
  ☆20Updated 4 years ago
• mcvickerlab / GenVarLoader
  Dataloader for applying sequence models to personalized genomics
  ☆25Updated this week
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆16Updated 6 years ago
• syntheticgenomics / sgidspace
  ☆21Updated 6 years ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆53Updated 4 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆96Updated 7 months ago
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆57Updated 4 years ago
• jbkinney / mavenn
  MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect
  ☆27Updated 3 weeks ago