Alternatives and similar repositories for mtVAE

Users that are interested in mtVAE are comparing it to the libraries listed below

• InfectionMedicineProteomics / BINN
  Generating biologically informed neural networks
  ☆47Updated 3 months ago
• BorgwardtLab / maldi_amr
  Code for the paper "Antimicrobial resistance prediction in clinical isolates through machine learning on MALDI-TOF mass spectra"
  ☆42Updated 2 years ago
• netZoo / netbooks
  Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..
  ☆40Updated last month
• cmap / lincs-workshop-2020
  CMap Notebooks for LINCS 2020 Workshop
  ☆46Updated 3 years ago
• cantinilab / momix-notebook
  ☆65Updated last year
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆36Updated 5 years ago
• gregbellan / Stabl
  ☆58Updated 6 months ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆37Updated 7 months ago
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆54Updated last year
• hamiltonoh / organage
  A package to estimate biological organ age using SomaScan plasma proteomics data
  ☆51Updated 11 months ago
• epigenelabs / inmoose
  InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
  ☆80Updated this week
• MaayanLab / HarmonizomePythonScripts
  ☆24Updated 2 months ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆48Updated 3 weeks ago
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆16Updated this week
• nadavbra / ukbb_parser
  A Python module for loading phenotypic and genetic data from the UK Biobank.
  ☆35Updated 3 years ago
• thbuerg / MetabolomicsCommonDiseases
  ⛑ Code for "Metabolomic profiles predict individual multi-disease outcomes" ⛑
  ☆22Updated 2 years ago
• maxconway / SNFtool
  Similarity Network Fusion
  ☆32Updated 9 years ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆53Updated 7 months ago
• saeyslab / FlowSOM_Python
  The complete FlowSOM package known from R, now available in Python!
  ☆20Updated this week
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆36Updated 3 years ago
• scverse / scvi-tutorials
  Notebooks used in scvi-tools tutorials
  ☆52Updated this week
• stanleyn / Comp790-166-Comp-Bio
  Computational Biology- Spring 2021
  ☆46Updated 3 years ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆48Updated 3 months ago
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆42Updated 3 weeks ago
• Bin-Chen-Lab / RGES
  reverse gene expression score
  ☆14Updated last year
• krishnanlab / obnb
  A Python toolkit for setting up benchmarking dataset using biomedical networks
  ☆22Updated this week
• const-ae / linear_perturbation_prediction-Paper
  ☆21Updated 2 weeks ago
• saphir746 / BiobankRead-Bash
  Python scripts to extract and pre-process UKB data
  ☆31Updated 6 years ago
• BorgwardtLab / reComBat
  reComBat package to correct batch effects
  ☆12Updated last year
• RasmussenLab / MOVE
  MOVE (Multi-Omics Variational autoEncoder) for integrating multi-omics data and identifying cross modal associations
  ☆77Updated 6 months ago