Variational autoencoders learn universal latent representations of metabolomics data (supplementary code)
☆13Jun 12, 2022Updated 3 years ago
Alternatives and similar repositories for mtVAE
Users that are interested in mtVAE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains scripts related to Surendran P, Stewart I et al. Nature Medicine 2022 "Rare and common genetic causes of chemica…☆18Jul 15, 2022Updated 3 years ago
- first attempt at creating and deploying rag based systems using langchain + ollama + streamlit☆10May 30, 2024Updated last year
- ⛑ Code for "Metabolomic profiles predict individual multi-disease outcomes" ⛑☆22Sep 27, 2022Updated 3 years ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆25Jun 3, 2025Updated 9 months ago
- webpage crawling tools for pubmed, google scholar and rss☆14May 2, 2025Updated 10 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Deep Learning Framework to Interpret Raw Mass Spectrometry (m/z) Data☆26Jan 21, 2024Updated 2 years ago
- Python code for "Conditional VAEs for Confound Removal and Normative Modelling of Neurodegenerative Diseases"☆10Oct 3, 2022Updated 3 years ago
- A Python API for deploying deep neural networks for Neuroimaging research. Powered by IMG at Stevens Neuroimaging and Informatics Institu…☆37Sep 13, 2021Updated 4 years ago
- Neuromorphologicaly Preserving Volumetric Data Encoding Using VQ-VAE☆16Dec 8, 2022Updated 3 years ago
- Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis☆11May 6, 2025Updated 10 months ago
- A modular implementation of product of experts VAEs for multimodal data☆14Nov 15, 2021Updated 4 years ago
- Evolutionary decision trees☆11Jun 16, 2025Updated 9 months ago
- RSS-NET: Regression with Summary Statistics exploiting Network Topology☆19Apr 23, 2025Updated 11 months ago
- PeakBot - detection of chromatographic and mz profile-mode peaks in LC-HRMS data☆22Feb 9, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- EHR datasets preprocessing scripts☆11Jan 31, 2024Updated 2 years ago
- Pytorch implementation for the paper: Data augmentation with norm-AE and selective pseudo-labelling for unsupervised domain adaptation☆14Mar 23, 2023Updated 3 years ago
- The source code for "Multimodal Variational Autoencoders for Semi-Supervised Learning: In Defense of Product-of-Experts"☆15Nov 24, 2020Updated 5 years ago
- Neural Network for Polygenic score analysis☆16Jan 25, 2023Updated 3 years ago
- Build and deploy cross platform bioinformatic utilities with Rust.☆19Apr 1, 2025Updated 11 months ago
- OpenAPI based libraries for different programming languages like R and Python☆20Updated this week
- Cross-Care☆11Jun 24, 2024Updated last year
- Concept-based generative models☆13Dec 13, 2024Updated last year
- Generative Art with Context-Free Grammars☆12Oct 15, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Analysis of snRNA-seq2 data coming from 3 months old mouse liver, dissecting the influence ploidy has on gene expression.☆14Dec 6, 2021Updated 4 years ago
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆12Mar 13, 2022Updated 4 years ago
- CompBioAgent: An LLM-powered agent for single-cell RNA-seq data exploration. https://doi.org/10.1101/2025.03.17.643771☆16Apr 25, 2025Updated 11 months ago
- An introduction to the basics of deep learning.☆21Oct 14, 2021Updated 4 years ago
- Visualising data frames as funky heatmaps 📊, the Python implementation☆24Feb 6, 2025Updated last year
- Fast and flexible semi-supervised learning for peptide detection in Python☆50Feb 27, 2025Updated last year
- An evolutionary source-code fuzzer☆12Mar 16, 2026Updated last week
- ☆19Oct 9, 2023Updated 2 years ago
- sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java☆56Aug 1, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A global network optimization approach for untargeted LC-MS metabolomics data annotation and metabolite discovery☆51Aug 28, 2023Updated 2 years ago
- PROGENY Python implementation☆12Apr 5, 2022Updated 3 years ago
- ☆20Mar 9, 2020Updated 6 years ago
- Project for Berkeley Deep RL course: using deep reinforcement learning for segmentation of medical images☆20Dec 13, 2018Updated 7 years ago
- [ICML 2024] Official Pytorch implementation of the paper "A Neural-Guided Dynamic Symbolic Network for Exploring Mathematical Expressions…☆22Nov 15, 2025Updated 4 months ago
- This repository contains training data for retention time prediction for the identification of metabolites from non-targeted LC-MS based …☆60Updated this week
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 2 years ago