huangzhii / biolearnsLinks
BioLearns: Computational Biology and Bioinformatics Toolbox in Python
☆12Updated 2 years ago
Alternatives and similar repositories for biolearns
Users that are interested in biolearns are comparing it to the libraries listed below
Sorting:
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆13Updated 3 years ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆12Updated last year
- Single Cell Consensus Clustering with Speed☆21Updated 2 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆26Updated last year
- Explore the cancer relevance of your gene list☆51Updated 4 months ago
- R/Shiny package for network-integrated pathway enrichment analysis☆14Updated 4 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆10Updated 8 months ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- An R package for analyzing high-dimensional cytometry data using the tidyverse.☆19Updated 10 months ago
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆14Updated 2 weeks ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆13Updated 2 years ago
- ☆19Updated 4 years ago
- Using BCR and expression for sequence embedding☆22Updated 2 weeks ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- PathIntegrate Python package for pathway-based multi-omics data integration☆16Updated 7 months ago
- Multi-omics data normalisation, model fitting and visualisation.☆25Updated 2 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Updated 2 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Network Visualization using both GUI and Programming☆28Updated last month
- R Shiny application for cross omics data analysis. In revision with Bioinformatics Adv.☆30Updated 2 weeks ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆14Updated last year
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆13Updated 2 years ago
- ☆13Updated last year
- Knowledge-primed neural networks☆38Updated 2 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆23Updated 4 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- Refining the impact of genetic evidence on clinical success☆25Updated 11 months ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆3Updated last year