Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in clinical text of electronic health records.
☆233Aug 14, 2020Updated 5 years ago
Alternatives and similar repositories for CliNER
Users that are interested in CliNER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Mar 3, 2020Updated 6 years ago
- Extracting narrative timelines (i.e. order and timing of events) from text☆20Apr 20, 2019Updated 6 years ago
- Medical Text Mining and Information Extraction with spaCy☆438Nov 1, 2022Updated 3 years ago
- Code for the old version of BioMedICUS, for the new version see the biomedicus3 repository.☆44Mar 13, 2023Updated 3 years ago
- ☆15Apr 28, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Public release of the DeepPhe analytic software☆30Nov 26, 2025Updated 4 months ago
- System for Medical Concept Extraction and Linking☆437Aug 12, 2024Updated last year
- ☆223Dec 11, 2024Updated last year
- BioBert Pytorch☆115Dec 9, 2022Updated 3 years ago
- init☆13Dec 4, 2024Updated last year
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆344Nov 9, 2021Updated 4 years ago
- Bidirectional LSTM-CRF for Clinical Concept Extraction using i2b2-2010 data☆90Oct 21, 2016Updated 9 years ago
- ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)☆436Oct 17, 2022Updated 3 years ago
- Unsupervised concept extraction from clinical text☆14Jun 17, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Health NLP Examples☆89Nov 8, 2018Updated 7 years ago
- ☆123May 2, 2018Updated 7 years ago
- A curated list of ML|NLP resources for healthcare.☆480Mar 26, 2023Updated 3 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆41May 27, 2020Updated 5 years ago
- Python wraper for MetaMap☆173Jul 22, 2020Updated 5 years ago
- A repository of code samples in various languages that show how to use the UMLS Terminology Services REST API☆173Aug 17, 2022Updated 3 years ago
- Code for the emrQA question answering dataset☆153Feb 9, 2022Updated 4 years ago
- A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).☆157Mar 12, 2023Updated 3 years ago
- Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"☆250Aug 24, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An information extraction system for free-text eligibility criteria☆38Jan 12, 2019Updated 7 years ago
- Clinical Pipeline Engine using Apache cTAKES☆24Nov 9, 2015Updated 10 years ago
- repository for Publicly Available Clinical BERT Embeddings☆759Aug 25, 2020Updated 5 years ago
- Flexible and powerful platform for biomedical information extraction from text☆39Jul 20, 2017Updated 8 years ago
- ☆98Jul 7, 2023Updated 2 years ago
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37May 21, 2025Updated 10 months ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆588Mar 25, 2023Updated 3 years ago
- ☆17Oct 10, 2019Updated 6 years ago
- This repository contains the data and code created under the project NLP4Rare-cm-uc3m.☆10Sep 14, 2021Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆611Aug 15, 2023Updated 2 years ago
- Bidirectional LSTM-CRF and ELMo for Named-Entity Recognition, Part-of-Speech Tagging and so on.☆1,485Dec 7, 2022Updated 3 years ago
- ☆54Mar 6, 2018Updated 8 years ago
- Medical Q&A with Deep Language Models☆571Mar 25, 2023Updated 3 years ago
- Basic Python 3 tools to interact with UMLS lexica☆124Jan 10, 2019Updated 7 years ago
- ☆13Nov 25, 2020Updated 5 years ago
- ML-Net is a novel end-to-end deep learning framework for multi-label classification of biomedical tasks. ML-Net combines the label predic…☆36Dec 23, 2019Updated 6 years ago