Alternatives and similar repositories for CliNER

Users that are interested in CliNER are comparing it to the libraries listed below

• clinicalml / embeddings
  Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts"
  ☆248Updated 4 years ago
• AnthonyMRios / pymetamap
  Python wraper for MetaMap
  ☆174Updated 4 years ago
• chapmanbe / pyConTextNLP
  ☆98Updated 2 years ago
• MeRajat / SolvingAlmostAnythingWithBert
  BioBert Pytorch
  ☆116Updated 2 years ago
• chb / py-umls
  Basic Python 3 tools to interact with UMLS lexica
  ☆123Updated 6 years ago
• jgc128 / mednli
  MedNLI - A Natural Language Inference Dataset For The Clinical Domain
  ☆131Updated 2 years ago
• clips / clicr
  Machine reading comprehension on clinical case reports
  ☆148Updated 5 years ago
• NIHOPA / NLPre
  Python library for Natural Language Preprocessing (NLPre)
  ☆191Updated last year
• chanzuckerberg / MedMentions
  A corpus of Biomedical papers annotated with mentions of UMLS entities.
  ☆329Updated 3 years ago
• noc-lab / clinical_concept_extraction
  Clinical Concept Extraction with Contextual Word Embedding
  ☆40Updated 5 years ago
• cambridgeltl / BioNLP-2016
  ☆122Updated 7 years ago
• Georgetown-IR-Lab / QuickUMLS
  System for Medical Concept Extraction and Linking
  ☆408Updated 11 months ago
• jakelever / kindred
  A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
  ☆156Updated 2 years ago
• EpistasisLab / ClinicalDataSources
  Open or Easy Access Clinical Data Sources for Biomedical Research
  ☆173Updated 8 years ago
• p2 / ClinicalTrialsNLP
  Classes for ClinicalTrials.gov related projects
  ☆47Updated 5 years ago
• Franck-Dernoncourt / pubmed-rct
  PubMed 200k RCT dataset: a large dataset for sequential sentence classification.
  ☆194Updated last year
• NLPatVCU / medaCy
  Medical Text Mining and Information Extraction with spaCy
  ☆438Updated 2 years ago
• mp2893 / med2vec
  Repository for Med2Vec project
  ☆218Updated 7 years ago
• datquocnguyen / BioPosDep
  Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)
  ☆33Updated 6 years ago
• gkotsis / negation-detection
  Negation detection NLP tool. If you use the code, please cite George Gkotsis, Sumithra Velupillai, Anika Oellrich, Harry Dean,…
  ☆55Updated 8 years ago
• BaderLab / saber
  Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work …
  ☆102Updated 5 years ago
• CrowdTruth / Medical-Relation-Extraction
  Crowdsourced ground truth for medical relation extraction.
  ☆69Updated 6 years ago
• trunghlt / AdverseDrugReaction
  ☆34Updated 8 years ago
• dmis-lab / bern
  A neural named entity recognition and multi-type normalization tool for biomedical text mining
  ☆178Updated 3 years ago
• lsy3 / clinical-notes-diagnosis-dl-nlp
  ☆70Updated 3 years ago
• ClarityNLP / ClarityNLP
  An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/
  ☆107Updated last year
• ncbi-nlp / BioSentVec
  BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
  ☆594Updated last year
• ncbi-nlp / BLUE_Benchmark
  BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.
  ☆296Updated 3 years ago
• bepnye / EBM-NLP
  ☆90Updated 5 years ago
• clips / bratreader
  Python code for reading Brat Repositories. Supports saving and reading from XML files for easy acces to annotations.
  ☆42Updated 6 years ago