umassbento / ehrbertLinks
A fine-tuned BERT using EHR notes.
☆14Updated 6 years ago
Alternatives and similar repositories for ehrbert
Users that are interested in ehrbert are comparing it to the libraries listed below
Sorting:
- ☆101Updated 3 years ago
- ☆38Updated 3 years ago
- Weak supervision methods for extracting real world evidence from EHRs☆34Updated 5 years ago
- ☆70Updated 4 years ago
- MedNLI - A Natural Language Inference Dataset For The Clinical Domain☆131Updated 2 years ago
- Clinical Text Summarization with Syntax-Based Negation and Semantic Concept Identification☆21Updated 5 years ago
- ☆55Updated 5 years ago
- Surfacing Semantic Data from Clinical Notes in Electronic Health Records for Tailored Care, Trial Recruitment and Clinical Research☆90Updated 2 years ago
- Clinical Concept Extraction with Contextual Word Embedding☆40Updated 5 years ago
- Code for the emrQA question answering dataset☆152Updated 3 years ago
- Pre-trained Language Model for Biomedical Question Answering☆125Updated 2 years ago
- High-performance tool for negation and uncertainty detection in radiology reports☆163Updated 2 years ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆62Updated 3 years ago
- A simple interface to inspect, improve and add concepts to biomedical NER+L -> MedCAT.☆85Updated 3 months ago
- BioBert Pytorch☆116Updated 2 years ago
- PubMed PICO Element Detection Dataset☆58Updated 7 years ago
- Code and pretrained model for paper "Learning to Summarize Radiology Findings"☆83Updated 6 years ago
- Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation☆50Updated 4 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- Weakly supervised medical named entity classification☆73Updated 2 years ago
- Data and code from our "Inferring Which Medical Treatments Work from Reports of Clinical Trials", NAACL 2019. This work concerns inferrin…☆66Updated 4 years ago
- Platform enabling Rapid Annotation for Clinical Entity Recognition☆49Updated 3 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆46Updated 5 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆77Updated 2 years ago
- ☆29Updated 4 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆154Updated 2 years ago
- A simple baseline for the MedNLI dataset☆21Updated 6 years ago
- ☆34Updated 8 years ago
- Dataset for medical question summarization introduced in the ACL 2019 paper "On the Summarization of Consumer Health Questions" (A. Ben A…☆31Updated 2 years ago