PapenfussLab / bionix
Functional highly reproducible bioinformatics pipelines
☆86Updated 2 months ago
Alternatives and similar repositories for bionix:
Users that are interested in bionix are comparing it to the libraries listed below
- Bioinformatics pipelines with Haskell and Shake☆55Updated 5 years ago
- RNAlien - unsupervised RNA family model construction☆14Updated 3 years ago
- Nextflow pipeline for hyperparameter optimization of machine learning models☆21Updated 8 months ago
- A collection of bioinformatics algorithms☆12Updated 2 years ago
- ☆62Updated 11 months ago
- All-in-one analysis pipeline☆34Updated 4 months ago
- piano - An R/Bioconductor package for gene set analysis☆13Updated 2 years ago
- A Nix build graph profiler☆31Updated last year
- GeneNetwork (2nd generation)☆34Updated this week
- Standard set of packages and overlays for data-scientists [maintainer=@tbenst]☆75Updated 3 years ago
- 🧬 Efficient parallelized peta-scale protein database search☆42Updated last year
- Bayesian co-estimation of phylogenies and multiple alignments via MCMC☆46Updated this week
- guix packages for bioinformatics software☆23Updated 11 months ago
- Fast DNA manipulation for Rust and Python☆48Updated 7 months ago
- Tools for removing the tedious nature of creating nixpkgs derivations [maintainer=@costrouc]☆45Updated last year
- Aggregated bundlers [maintainer=@tomberek, @Artturin]☆106Updated 2 months ago
- NGLess: NGS with less work☆144Updated 5 months ago
- nix-types | type hints for nix☆76Updated 2 months ago
- The command-line interface to GGD☆42Updated 2 years ago
- A GPU-friendly implementation of SpliceAI☆11Updated 2 years ago
- Generate a graph from nixpkgs☆22Updated 8 months ago
- A more discerning cousin of nix-collect-garbage☆61Updated 2 weeks ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆126Updated 10 months ago
- A client for the Hydra Nix CI☆44Updated 5 months ago
- De Bruijn graphs in Rust☆65Updated 5 months ago
- 📺 The power of Haskell in your terminal!☆42Updated 3 weeks ago
- 🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transc…☆176Updated 3 weeks ago
- A collection of all the content from NixCon Paris 2022 and beyond☆52Updated 8 months ago
- The BioPAX Object Model, API and utilities implemented in Java☆25Updated 6 months ago