PapenfussLab / bionix

Related projects ⓘ

Alternatives and complementary repositories for bionix

• PapenfussLab / bioshake
  Bioinformatics pipelines with Haskell and Shake
  ☆55Updated 5 years ago
• eggzilla / RNAlien
  RNAlien - unsupervised RNA family model construction
  ☆14Updated 3 years ago
• kaizhang / bioinformatics-toolkit
  A collection of bioinformatics algorithms
  ☆12Updated 2 years ago
• bredelings / BAli-Phy
  Bayesian co-estimation of phylogenies and multiple alignments via MCMC
  ☆46Updated this week
• nextflow-io / hyperopt
  Nextflow pipeline for hyperparameter optimization of machine learning models
  ☆19Updated 6 months ago
• Ebedthan / sabreur
  fast, reliable and handy demultiplexing tool for fastx files
  ☆14Updated 7 months ago
• Taiji-pipeline / Taiji
  All-in-one analysis pipeline
  ☆34Updated 2 months ago
• genenetwork / genenetwork2
  GeneNetwork (2nd generation)
  ☆34Updated this week
• timbertson / runix
  ☆62Updated 9 months ago
• ekg / guix-genomics
  guix packages for bioinformatics software
  ☆22Updated 10 months ago
• nix-community / nix-data-science
  Standard set of packages and overlays for data-scientists [maintainer=@tbenst]
  ☆72Updated 3 years ago
• stschiff / sequenceTools
  ☆41Updated last week
• skoblov-lab / spliceai-reforged
  A GPU-friendly implementation of SpliceAI
  ☆10Updated last year
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆63Updated 4 months ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆50Updated 6 months ago
• ngless-toolkit / ngless
  NGLess: NGS with less work
  ☆142Updated 3 months ago
• Euphrasiologist / nu_plugin_bio
  Bioinformatics plugin for nushell.
  ☆25Updated last year
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆14Updated last year
• SecureDNA / quickdna
  Fast DNA manipulation for Rust and Python
  ☆44Updated 5 months ago
• nix-community / nixpkgs-pytools
  Tools for removing the tedious nature of creating nixpkgs derivations [maintainer=@costrouc]
  ☆45Updated last year
• COMBINE-lab / terminus
  ☆57Updated 2 years ago
• serokell / nix-templates
  Nix Flake templates for various languages
  ☆48Updated last month
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆65Updated 2 months ago
• BioPAX / Paxtools
  The BioPAX Object Model, API and utilities implemented in Java
  ☆25Updated 4 months ago
• conda-incubator / conda-env-builder
  Build and maintain multiple custom conda environments all in one place.
  ☆37Updated last year
• galaxyproject / gxformat2
  Galaxy Workflow Format 2
  ☆9Updated 2 months ago
• Kha / nixprof
  A Nix build graph profiler
  ☆31Updated last year
• NBISweden / workshop-python
  ☆8Updated last week
• ylab-hi / pxblat
  PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT
  ☆17Updated this week