Alternatives and similar repositories for pdb2fasta

Users that are interested in pdb2fasta are comparing it to the libraries listed below

• lhatsk / AlphaLink
  AlphaLink: Integrating crosslinking MS data into OpenFold
  ☆71Updated last year
• aqlaboratory / rgn2
  ☆107Updated last year
• cmbi / dssp
  The DSSP building software
  ☆47Updated 2 years ago
• jproney / AF2Rank
  ☆114Updated 2 years ago
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆114Updated last year
• hiranumn / DeepAccNet
  Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.
  ☆90Updated 4 years ago
• dina-lab3D / CombFold
  ☆87Updated last year
• ProteinDesignLab / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆80Updated 2 years ago
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆46Updated 2 years ago
• patrickbryant1 / AFProfile
  Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile
  ☆70Updated last year
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆58Updated 2 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆123Updated last week
• RosettaCommons / trRosetta2
  Repository for publicly available deep learning models developed in Rosetta community
  ☆119Updated 4 years ago
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆150Updated last month
• delalamo / af2_conformations
  A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2
  ☆97Updated 2 years ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆142Updated 2 months ago
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆163Updated 3 weeks ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• sarisabban / RosettaDesign
  RosettaDesign using PyRosetta
  ☆32Updated 6 years ago
• j3xugit / RaptorX-3DModeling
  Note that current version does not include search of very large metagenome data. For some proteins, metagenome data is important. We will…
  ☆98Updated 3 years ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆62Updated last year
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆121Updated 2 years ago
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆43Updated 2 years ago
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆114Updated last year
• Graylab / deepH3-distances-orientations
  ☆35Updated 3 years ago
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆51Updated 4 years ago
• bjornwallner / alphafoldv2.2.0
  Open source code for AlphaFold.
  ☆39Updated 2 years ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆146Updated 2 years ago
• lehner-lab / MoCHI
  Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…
  ☆54Updated 6 months ago