Material from papers from KULL centre
☆71May 29, 2024Updated last year
Alternatives and similar repositories for papers
Users that are interested in papers are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian Optimization with Pretrained Protein Sequence Models☆56Jul 27, 2024Updated last year
- ☆38Dec 21, 2023Updated 2 years ago
- Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space☆31Dec 18, 2025Updated 3 months ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆30Dec 21, 2023Updated 2 years ago
- Software for the prediction of FRET data from conformational ensembles.☆24Dec 19, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆45Jan 10, 2024Updated 2 years ago
- Robust and stable clustering of molecular dynamics simulation trajectories.☆19Sep 2, 2022Updated 3 years ago
- ☆19Apr 7, 2025Updated last year
- ☆17Mar 26, 2026Updated 3 weeks ago
- ☆84Mar 31, 2026Updated 2 weeks ago
- ☆18Oct 30, 2023Updated 2 years ago
- LASSI - Lattice Simulation Engine For Stickers And Spacer Interactions☆19Sep 3, 2025Updated 7 months ago
- A python toolkit for analysing membrane protein-lipid interactions.☆70Mar 30, 2026Updated 2 weeks ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆181Oct 7, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- COSMO: COarse-grained Simulation of intrinsically disordered prOteins with openMM☆15Feb 8, 2026Updated 2 months ago
- Structure prediction of alternative protein conformations☆83Feb 24, 2025Updated last year
- A series of scripts that facilitate the prediction of user-defined protein structural properties using AlphaFold2☆11Aug 28, 2023Updated 2 years ago
- Package for reading, analysis and visualization of metadynamics HILLS☆39Nov 28, 2023Updated 2 years ago
- Code and software used to design de novo protein nanomachines. Supplementary material for "Computational design of nanoscale rotational m…☆10Mar 19, 2022Updated 4 years ago
- ☆12Jun 16, 2023Updated 2 years ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆72Aug 26, 2024Updated last year
- Funnel maker is a set of scripts that sets up funnel metadynamics simulations for protein-ligand binding with PLUMED and OpenMM.☆15Jan 3, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Source code for "Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome inter…☆13Jun 17, 2022Updated 3 years ago
- ☆80Feb 26, 2024Updated 2 years ago
- A collection of *fold* tools☆304Aug 8, 2025Updated 8 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆46May 22, 2025Updated 10 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- A dependency-free cross-platform swiss army knife for PDB files.☆450Feb 3, 2026Updated 2 months ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Jul 25, 2022Updated 3 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Mar 22, 2024Updated 2 years ago
- This repo contains the collection of codes to find designer interfacial mutations☆17Sep 4, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Open-source docking pipeline leveraging pairwise statistics☆15Jul 26, 2024Updated last year
- ☆52Jan 2, 2025Updated last year
- A domain parser for Alphafold models☆47Dec 12, 2023Updated 2 years ago
- Official repo of the Biomeccanica Multiscala course (prof. Marco A. Deriu) - Master Degree in Biomedical engineering, Politecnico di Tori…☆12Jan 2, 2025Updated last year
- Building more accurate protein structures from backbone torsion angles☆15Mar 21, 2025Updated last year
- ☆44Feb 15, 2022Updated 4 years ago
- ☆11Sep 17, 2024Updated last year