jtfrey / vscode-shell-proxyLinks
An attempt at proxying vscode remote shell backend through cluster login nodes.
☆16Updated 4 months ago
Alternatives and similar repositories for vscode-shell-proxy
Users that are interested in vscode-shell-proxy are comparing it to the libraries listed below
Sorting:
- Howto and implementation documentation☆22Updated last week
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆79Updated 2 months ago
- Multi-agent driven cell type annotation for single-cell RNA-Seq data stored in Anndata format☆39Updated last week
- Automatically annotate cell types, consistently across samples.☆15Updated 3 weeks ago
- Tabular seff☆83Updated last week
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Updated last month
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆113Updated this week
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆61Updated last month
- Cookiecutter for snakemake slurm profile☆132Updated last year
- Turn an existing conda environment into a Singularity container☆81Updated 2 years ago
- ☆10Updated 7 months ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆21Updated last month
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆37Updated last week
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆65Updated this week
- Utilities for large scale distributed single cell data processing☆24Updated last month
- An awesome tool to visualize snakemake rule graphs☆13Updated 5 months ago
- Fit generalized linear models in python.☆28Updated 2 years ago
- ScaleBio Single-cell RNA Nextflow Workflow☆37Updated 2 months ago
- Online platform to host your (Nextflow, Snakemake, ...) workflows with integrated result rendering.☆19Updated 3 weeks ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆33Updated this week
- BioContainers specifications☆52Updated 2 years ago
- Image Mass Cytometry analysis pipeline☆26Updated 3 months ago
- ☆33Updated this week
- a minimal, scriptable genome browser for python☆51Updated 8 months ago
- Code and documentation for the curation of cellxgene datasets☆49Updated this week
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- Multimodal Data (.h5mu) implementation for Python☆99Updated 3 months ago
- WDL and CWL compiler for the DNAnexus platform☆34Updated last month
- A template for standard compliant snakemake-workflows☆112Updated last month
- Registries for basic biological entities, coupled to public ontologies.☆17Updated last week