haewonc / LatProtRL
[ICML 24] Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space
☆14Updated 9 months ago
Alternatives and similar repositories for LatProtRL:
Users that are interested in LatProtRL are comparing it to the libraries listed below
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆104Updated 2 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆74Updated 10 months ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆93Updated 2 years ago
- Aligning protein generative models with experimental fitness☆94Updated 6 months ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆86Updated last year
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆76Updated 4 months ago
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆121Updated 3 weeks ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆59Updated 9 months ago
- ☆87Updated 6 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆55Updated 3 weeks ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆38Updated 11 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆70Updated this week
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆73Updated last year
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆71Updated 6 months ago
- ☆69Updated 3 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆157Updated 2 months ago
- Official repository of EnzymeFlow☆89Updated 5 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆98Updated 7 months ago
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 2 years ago
- ☆73Updated last year
- ☆65Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆57Updated last week
- ☆106Updated 2 years ago
- FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)☆127Updated 2 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆113Updated last month
- MSA Transformer reproduction code☆82Updated 3 years ago
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆94Updated last year
- PEER Benchmark, appear at NeurIPS 2022 Dataset and Benchmark Track (https://arxiv.org/abs/2206.02096)☆89Updated 2 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year