haewonc / LatProtRL
[ICML 24] Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space
☆13Updated 8 months ago
Alternatives and similar repositories for LatProtRL:
Users that are interested in LatProtRL are comparing it to the libraries listed below
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆57Updated 8 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆55Updated this week
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆75Updated 3 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆73Updated 9 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆38Updated 10 months ago
- Aligning protein generative models with experimental fitness☆90Updated 5 months ago
- ☆32Updated last month
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆73Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆91Updated 2 years ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆73Updated last month
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆57Updated 11 months ago
- ☆68Updated 2 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆115Updated 2 weeks ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆70Updated 6 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆104Updated last month
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆45Updated 3 months ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆84Updated last year
- Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined in the paper "Protein Structure and Sequ…☆89Updated 2 years ago
- ☆91Updated 5 months ago
- Official implementation of "Learning the language of protein structures"☆27Updated 4 months ago
- Code for 'On Pre-trained Language Models For Antibody'☆33Updated 2 years ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆58Updated last year
- Efficient implementatin of ESM family.☆54Updated 2 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆63Updated last month
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆57Updated 2 months ago
- In-silico design pipeline for evaluating protein structure diffusion models.☆23Updated 9 months ago
- diffusion model for protein sequence generation☆50Updated 2 years ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆50Updated last month
- ☆66Updated last year