haewonc / LatProtRLLinks
[ICML 24] Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space
☆15Updated last year
Alternatives and similar repositories for LatProtRL
Users that are interested in LatProtRL are comparing it to the libraries listed below
Sorting:
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆78Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 6 months ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆73Updated 2 years ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆96Updated 6 months ago
- Aligning protein generative models with experimental fitness☆113Updated last month
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆121Updated 9 months ago
- Public Release of ProGen3 family of Models☆91Updated 4 months ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆70Updated 4 months ago
- ☆42Updated 2 years ago
- Official implementation of "Learning the language of protein structures"☆40Updated 5 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆84Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆115Updated 6 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆145Updated 7 months ago
- MSA Transformer reproduction code☆87Updated 4 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆113Updated 3 months ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆84Updated last month
- ☆75Updated 10 months ago
- Official repository of EnzymeFlow☆97Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆40Updated last year
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆97Updated 11 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆59Updated last year
- ☆65Updated 2 years ago
- Generative Language Modeling for Antibody Design☆173Updated last year
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated 2 years ago
- ☆128Updated 6 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆109Updated last year
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Updated last year
- Code for 'On Pre-trained Language Models For Antibody'☆32Updated 2 years ago