An example GenBank file reader in Rust
☆37Jun 8, 2021Updated 5 years ago
Alternatives and similar repositories for gb_read
Users that are interested in gb_read are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 10 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Aug 19, 2026Updated last month
- ☆16Sep 18, 2026Updated last week
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆19Oct 26, 2025Updated 11 months ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 9 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- Snakemake tutorial materials☆19Mar 9, 2020Updated 6 years ago
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Serves a web interface and RESTful API for reference genome assets.☆12Apr 11, 2026Updated 5 months ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆374Aug 17, 2026Updated last month
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- BAM/SAM/CRAM/FASTA reader, pileup engine, BCF/BAM writing☆29Updated this week
- A set of command line utilities based on Rust-Bio.☆205Jun 24, 2024Updated 2 years ago
- Rust utility code☆31Feb 9, 2024Updated 2 years ago
- ARCHIVED Provides some helper functions for using the GitHub V4 API☆29May 10, 2022Updated 4 years ago
- A compact MCMC library in Rust with optional GPU support.☆26Aug 1, 2026Updated last month
- Bitpacked sequence trait and implementation☆19Aug 19, 2026Updated last month
- A collection of publications on comparison of high-throughput sequencing technologies.☆27Dec 3, 2025Updated 9 months ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Rust bindings to minimap2 library☆114Sep 14, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Packaging and Publishing with Python☆24Updated this week
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data☆32Jun 10, 2020Updated 6 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆85Feb 23, 2025Updated last year
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆25Sep 3, 2026Updated 3 weeks ago
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Aug 26, 2026Updated last month
- R package to compute pagerank of CRAN packages☆10Mar 18, 2016Updated 10 years ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 7 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Text Analysis with Python☆13Updated this week
- Parallel Programming in Python☆12Updated this week
- Benchmarking pairwise aligners☆38Aug 26, 2026Updated last month
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 3 years ago
- Python for Humanities☆13Updated this week
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated 2 years ago
- Code snippets to do useful things for 11 languages: C, C++, Groovy, Ruby, Java, Scala, Python, Haskell, Javascript, Lisp, Clojure, Rust☆24Jun 14, 2023Updated 3 years ago