Position-wise analysis of sequencing and genomics data
☆41Jul 6, 2023Updated 3 years ago
Alternatives and similar repositories for plastid
Users that are interested in plastid are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Riborex: Fast and flexible identification of differential translation from Ribo-seq data☆12Apr 9, 2021Updated 5 years ago
- Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis,…☆12May 16, 2023Updated 3 years ago
- ☆74Aug 19, 2023Updated 3 years ago
- Training material for intermediate R / Bioconductor courses☆17Mar 15, 2023Updated 3 years ago
- A suite of regression-based tools for ribosome profiling data analysis☆10Sep 23, 2026Updated 2 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Jul 29, 2020Updated 6 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Jun 27, 2020Updated 6 years ago
- ☆57Mar 31, 2020Updated 6 years ago
- TFFM framework☆13Sep 22, 2025Updated last year
- Visual exploration of large genome interaction matrices with interactive small multiples.☆13Dec 1, 2021Updated 4 years ago
- splicing and feature maps for RBPs☆25Oct 4, 2026Updated last week
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆15Updated this week
- Locating genetic regions that are "just right"☆17Oct 26, 2016Updated 9 years ago
- Script to automate differential expression analysis using DESeq2, edgeR or limma-voom☆20Aug 22, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Aug 21, 2026Updated last month
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.☆44Dec 14, 2015Updated 10 years ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 10 years ago
- ☆13Sep 29, 2026Updated last week
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- ☆27May 22, 2020Updated 6 years ago
- Automatically identify non-interfering nucleotide linkers between a pegRNA and 3' motif☆10Aug 13, 2025Updated last year
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆30Aug 3, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tutorials covering various topics in genomic data analysis.☆17Nov 29, 2018Updated 7 years ago
- GFF and GVF specification documents☆222Jun 18, 2024Updated 2 years ago
- ☆22May 27, 2024Updated 2 years ago
- A modernized ART for Illumina, MGI Tech & More read simulation.☆43Jul 31, 2026Updated 2 months ago
- Repository of script tools, examples, and contributed code for using the MG-RAST API☆25Mar 22, 2021Updated 5 years ago
- Emending Alignment of Spliced Transcript Reads☆13Jan 19, 2026Updated 8 months ago
- Documentation and tutorials worth sharing.☆10Dec 7, 2022Updated 3 years ago
- 塩基配列を高速に検索するウェブサービス☆18Mar 31, 2026Updated 6 months ago
- R package for subset- and name-aware array utility functions☆26Nov 28, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆13Sep 5, 2017Updated 9 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 6 months ago
- ☆12Apr 21, 2023Updated 3 years ago
- A tool for analyzing trascriptomes of millions of single cells.☆97Sep 28, 2026Updated 2 weeks ago
- ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142☆11Sep 6, 2022Updated 4 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Apr 12, 2024Updated 2 years ago
- A new workflow for the custom design of CRISPR libraries.☆21Nov 22, 2022Updated 3 years ago