Position-wise analysis of sequencing and genomics data
☆41Jul 6, 2023Updated 3 years ago
Alternatives and similar repositories for plastid
Users that are interested in plastid are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Jun 27, 2020Updated 6 years ago
- Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis,…☆12May 16, 2023Updated 3 years ago
- ☆75Aug 19, 2023Updated 3 years ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Jul 29, 2020Updated 6 years ago
- Training material for intermediate R / Bioconductor courses☆17Mar 15, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆57Mar 31, 2020Updated 6 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Mar 22, 2021Updated 5 years ago
- splicing and feature maps for RBPs☆25Oct 4, 2026Updated 3 weeks ago
- Reconstructing single-cell lineage history using mitochondrial mutation drift dynamics☆13Aug 22, 2026Updated 2 months ago
- We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ri…☆15Oct 9, 2026Updated 3 weeks ago
- Locating genetic regions that are "just right"☆17Oct 26, 2016Updated 10 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- Script to automate differential expression analysis using DESeq2, edgeR or limma-voom☆20Aug 22, 2018Updated 8 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.☆45Oct 22, 2026Updated last week
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Aug 21, 2026Updated 2 months ago
- Tutorials covering various topics in genomic data analysis.☆16Nov 29, 2018Updated 7 years ago
- A tool for analyzing trascriptomes of millions of single cells.☆98Sep 28, 2026Updated last month
- A pipeline to generate a Deep Nerual Network cell type deconvolution model for bulk RNASeq samples from single cell experiment data☆12Nov 17, 2020Updated 5 years ago
- Subsampling of high-throughput sequencing count data☆20May 10, 2019Updated 7 years ago
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆30Aug 3, 2026Updated 2 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆43Sep 30, 2026Updated last month
- Documentation and tutorials worth sharing.☆10Dec 7, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DCP Expression Matrix Service☆12Feb 15, 2026Updated 8 months ago
- GFF and GVF specification documents☆222Jun 18, 2024Updated 2 years ago
- ☆28May 22, 2020Updated 6 years ago
- R package for subset- and name-aware array utility functions☆26Nov 28, 2025Updated 11 months ago
- ☆22May 27, 2024Updated 2 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆21Dec 20, 2023Updated 2 years ago
- Emending Alignment of Spliced Transcript Reads☆13Jan 19, 2026Updated 9 months ago
- A new workflow for the custom design of CRISPR libraries.☆21Nov 22, 2022Updated 3 years ago
- A web app to compare single-cell annotations☆10Feb 17, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆13Sep 5, 2017Updated 9 years ago
- Repository of script tools, examples, and contributed code for using the MG-RAST API☆25Mar 22, 2021Updated 5 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Nov 21, 2018Updated 7 years ago
- 塩基配列を高速に検索するウェブサービス☆18Mar 31, 2026Updated 7 months ago
- A program for summarising CpG methylation patterns☆20Sep 9, 2016Updated 10 years ago
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Oct 16, 2026Updated 2 weeks ago
- Fully Automated and Standardized (FAST) iCLIP analysis pipeline.☆21Oct 7, 2017Updated 9 years ago