joshuagryphon / plastidLinks
Position-wise analysis of sequencing and genomics data
☆41Updated 2 years ago
Alternatives and similar repositories for plastid
Users that are interested in plastid are comparing it to the libraries listed below
Sorting:
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps☆124Updated 7 years ago
- Galaxy RNA workbench☆40Updated 5 years ago
- ☆57Updated 5 years ago
- AQUAS TF and histone ChIP-seq pipeline☆111Updated 3 years ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆137Updated 2 years ago
- Workflows for converting between sequence data formats☆39Updated 4 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆107Updated 3 weeks ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- nucleosome calling using ATAC-seq☆109Updated 4 years ago
- Quality of RNA-Seq Toolset☆53Updated 6 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126Updated 7 months ago
- Documenting usage and experience with bioinformatic tools☆40Updated 10 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- A tool for bigWig files.☆118Updated 7 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- Tools for next-generation sequencing analysis☆89Updated 6 years ago
- Simple FASTQ quality assessment using Python☆108Updated 4 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- A false-positive filter for variants called from massively parallel sequencing☆29Updated 8 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆62Updated 6 years ago
- Pure-python implementation of UCSC liftOver genome coordinate conversion☆99Updated last year
- Next-Generation Sequencing(NGS) toolkits.☆48Updated 9 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- small RNA analysis from NGS data☆37Updated last year
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- Documentation and description of AWS iGenomes S3 resource.☆118Updated last year
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- ☆90Updated 5 months ago