dama-lab / masmatLinks
Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI
☆40Updated this week
Alternatives and similar repositories for masmat
Users that are interested in masmat are comparing it to the libraries listed below
Sorting:
- TF2.3 DCE-/DSC-MRI processing code, collected, tested and made available to all.☆39Updated 3 months ago
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆23Updated 4 years ago
- CNN based brain masking☆19Updated 5 months ago
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆79Updated last year
- Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)☆66Updated 6 years ago
- ☆30Updated 3 years ago
- High-throughput Python platform for image reconstruction and analysis☆49Updated 4 months ago
- Automatic White Matter Bundle Segmentation☆250Updated 2 years ago
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆36Updated 8 months ago
- Repository of hand corrected skullstripping for the Enhanced Rockland Sample Neurofeedback Study☆19Updated 4 years ago
- 3D MRI data exploration and segmentation tool.☆76Updated 2 years ago
- A space to log issues, updates, and software related to the ATLAS (Anatomical Tracings of Lesions After Stroke) database.☆83Updated 2 years ago
- PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using…☆105Updated 4 years ago
- Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the …☆37Updated 4 years ago
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆47Updated 4 years ago
- Automated deep-learning based brain tumor segmentation on MRI☆35Updated 3 years ago
- Intensity normalization of multi-channel MRI images using the method proposed by Nyul et al. 2000☆60Updated 3 years ago
- RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…☆108Updated 3 months ago
- Brain Hippocampus Segmentation. deprecated, use hippodeep_pytorch instead☆34Updated 5 years ago
- Pre-trained models and utilities for deep learning on medical images in Python (Keras/TensorFlow)☆237Updated last month
- Deep Whole Brain Segmentation Using SLANT Method☆128Updated last year
- Multi-site dMRI harmonization☆49Updated 6 months ago
- The open source toolbox for reproducible diffusion MRI-based microstructure estimation☆111Updated 11 months ago
- A framework for joint super-resolution and image synthesis, without requiring real training data☆177Updated last year
- MIRTK based SVR reconstruction☆61Updated 7 months ago
- White matter tractography clustering and more...☆80Updated 5 months ago
- NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.☆158Updated 3 years ago
- CNN-based segmentation tool for segmenting PVS on T1 and WMH on FLAIR MRI☆13Updated 8 months ago
- Very fast greedy diffeomorphic registration code☆81Updated 6 months ago
- Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo☆25Updated last year