dama-lab / masmatLinks
Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI
☆41Updated last month
Alternatives and similar repositories for masmat
Users that are interested in masmat are comparing it to the libraries listed below
Sorting:
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆23Updated 4 years ago
- Automatic White Matter Bundle Segmentation☆249Updated 2 years ago
- Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo☆26Updated last year
- Repository of hand corrected skullstripping for the Enhanced Rockland Sample Neurofeedback Study☆19Updated 4 years ago
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆84Updated last month
- A space to log issues, updates, and software related to the ATLAS (Anatomical Tracings of Lesions After Stroke) database.☆84Updated 3 years ago
- TF2.3 DCE-/DSC-MRI processing code, collected, tested and made available to all.☆40Updated 4 months ago
- 3D MRI data exploration and segmentation tool.☆77Updated 2 years ago
- High-throughput Python platform for image reconstruction and analysis☆50Updated 5 months ago
- Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)☆66Updated 6 years ago
- ☆32Updated 3 years ago
- Deep Whole Brain Segmentation Using SLANT Method☆128Updated 2 years ago
- Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the …☆38Updated 4 years ago
- Pre-trained models and utilities for deep learning on medical images in Python (Keras/TensorFlow)☆242Updated last month
- CNN based brain masking☆19Updated 6 months ago
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆36Updated 9 months ago
- RadQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) and computed tomography (C…☆109Updated 5 months ago
- NiftyMIC is a research-focused toolkit for motion correction and volumetric image reconstruction of 2D ultra-fast MRI.☆160Updated 3 years ago
- Just when I thought you couldn’t possibly be any dumber, you go and do something like this… and totally redeem yourself!☆26Updated 10 months ago
- A project to provide custom sorting and renaming of dicom files☆84Updated 8 months ago
- Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)☆47Updated 4 years ago
- Brain Hippocampus Segmentation. deprecated, use hippodeep_pytorch instead☆34Updated 5 years ago
- Python-based software utilizing deep learning techniques to segment high-resolution time-of-flight MRI angiography data with high sensiti…☆25Updated last month
- PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using…☆104Updated 5 years ago
- MIRTK based SVR reconstruction☆63Updated 9 months ago
- Very fast greedy diffeomorphic registration code☆83Updated 2 weeks ago
- Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space☆50Updated 3 years ago
- MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit☆102Updated 3 months ago
- A framework for joint super-resolution and image synthesis, without requiring real training data☆178Updated last year
- The open source toolbox for reproducible diffusion MRI-based microstructure estimation☆113Updated last year