Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI
☆41Nov 28, 2025Updated 3 months ago
Alternatives and similar repositories for masmat
Users that are interested in masmat are comparing it to the libraries listed below
Sorting:
- Tools for MRI mouse brain morphometry☆32Jan 16, 2017Updated 9 years ago
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆23Aug 20, 2021Updated 4 years ago
- small mammals brain MRI☆15Oct 13, 2023Updated 2 years ago
- ☆31May 17, 2024Updated last year
- A generally applicable whole-brain preprocessing toolbox for mice and rats☆12Jul 11, 2024Updated last year
- Multi Atlas Segmentation for 3D MRI☆11Mar 24, 2020Updated 5 years ago
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆36Feb 20, 2026Updated last week
- Generate a package-manager-friendly mouse brain atlases collection.☆22Aug 4, 2023Updated 2 years ago
- U-Net based automatic Rat brain-mask Segmentation tool, developed by Hsu☆18Nov 15, 2021Updated 4 years ago
- Small Animal Magnetic Resonance Imaging via Python.☆43Mar 4, 2024Updated last year
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆51Feb 19, 2026Updated last week
- ☆10Apr 1, 2025Updated 11 months ago
- Matlab GUI for single R2*/T2* mapping with multi-echo GRE data☆14Oct 4, 2022Updated 3 years ago
- SPM implementation of https://github.com/JosePMarques/MP2RAGE-related-scripts☆13Feb 18, 2026Updated last week
- This repository collates the models for CT to MRI synthesis. MRIs have benefits over CTs: they have better soft tissue contrast and regis…☆21Feb 8, 2025Updated last year
- Pandoc Node.js wrapper that makes it seamlessly available as a local dependency on OS X, Linux, and Windows. http://johnmacfarlane.net/pa…☆15Jul 1, 2019Updated 6 years ago
- Developing a Brain Atlas through Deep Learning☆53Aug 9, 2025Updated 6 months ago
- A Rat fMRI multi-center study☆33Aug 12, 2022Updated 3 years ago
- CNN-based segmentation tool for segmenting PVS on T1 and WMH on FLAIR MRI☆13Mar 28, 2025Updated 11 months ago
- A new tool for harmonizing volumetric MRI data from unseen scanners (Garcia-Dias et al. 2020)☆17Jan 6, 2023Updated 3 years ago
- Python package to read Heidelberg Spectralis files☆16Jun 30, 2025Updated 8 months ago
- ☆19Sep 27, 2018Updated 7 years ago
- A modular toolkit for Bruker MRI raw-data handling.☆51Feb 3, 2026Updated last month
- Code and dataset for SNP2Vec paper☆21May 12, 2023Updated 2 years ago
- The plug-and-play, browser-accessible, containerised data analysis environment.☆62Updated this week
- Cardiac Image Multi-Atlas Segmentation pipeline (CIMAS)☆51Feb 13, 2017Updated 9 years ago
- A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://ww…☆30Sep 9, 2025Updated 5 months ago
- Morphological organ segmentation for CT scans☆24Dec 1, 2020Updated 5 years ago
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆176Nov 21, 2025Updated 3 months ago
- Multi Atlas Segmentation of brain anatomy using ANTs☆32Oct 26, 2016Updated 9 years ago
- Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space☆34Nov 18, 2022Updated 3 years ago
- ☆32Mar 8, 2022Updated 3 years ago
- These are simulations meant to depict the working principles behind Magnetic Particle Imaging as teaching tools☆11Oct 7, 2023Updated 2 years ago
- Deep Learning Part 2, 2019 edition - transcriptions, screenshots and notebooks☆11Jul 19, 2019Updated 6 years ago
- This repository contains software tools developed/adopted by the Quantitative Imaging and Medical Physics (QIMP) team, Medical University…☆10Aug 2, 2024Updated last year
- In this work, four popular deep convolutional neural networks (U-NET, DeepLab, FCN and SegNet) for image segmentation are constructed and…☆12Nov 21, 2022Updated 3 years ago
- ☆39Aug 8, 2023Updated 2 years ago
- A medical image converter☆32Jul 20, 2025Updated 7 months ago
- Computational Anatomy Toolbox for SPM12 or SPM25☆48Updated this week