Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI
☆40Nov 28, 2025Updated 7 months ago
Alternatives and similar repositories for masmat
Users that are interested in masmat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools for MRI mouse brain morphometry☆32Jan 16, 2017Updated 9 years ago
- Multi-Template Mouse Brain MRI Atlas (MBMA): both in-vivo and ex-vivo☆28Jan 20, 2024Updated 2 years ago
- Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI☆23Aug 20, 2021Updated 4 years ago
- ☆32Apr 8, 2026Updated 2 months ago
- atlasBREX: Automated averaged template-derived brain extraction in animal MRI☆18Jan 15, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain☆36Jun 22, 2026Updated last week
- Multi Atlas Segmentation for 3D MRI☆11Mar 24, 2020Updated 6 years ago
- fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/☆61May 25, 2026Updated last month
- A modular toolkit for Bruker MRI raw-data handling.☆56Feb 3, 2026Updated 5 months ago
- A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://ww…☆31Jun 17, 2026Updated 2 weeks ago
- ☆11Apr 1, 2025Updated last year
- A new tool for harmonizing volumetric MRI data from unseen scanners (Garcia-Dias et al. 2020)☆18Jan 6, 2023Updated 3 years ago
- Developing a Brain Atlas through Deep Learning☆53Aug 9, 2025Updated 10 months ago
- 3D Multi-modal (FLAIR and T1) Brain MRI Scan Segmentation using Generative Adversarial Learning☆22Dec 16, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The plug-and-play, browser-accessible, containerised data analysis environment.☆66Jun 26, 2026Updated last week
- Visualization of WhatsApp chat history data☆10Jan 31, 2016Updated 10 years ago
- This repository collates the models for CT to MRI synthesis. MRIs have benefits over CTs: they have better soft tissue contrast and regis…☆21Feb 8, 2025Updated last year
- dHCP structural pipeline☆16Jul 13, 2021Updated 4 years ago
- Code and dataset for SNP2Vec paper☆21May 12, 2023Updated 3 years ago
- A medical image converter☆32Jul 20, 2025Updated 11 months ago
- ISBI 2023 - A Registration- and Uncertainty-based Framework for White Matter Tract Segmentation with Only One Annotated Subject☆10Sep 10, 2023Updated 2 years ago
- In this work, four popular deep convolutional neural networks (U-NET, DeepLab, FCN and SegNet) for image segmentation are constructed and…☆11Nov 21, 2022Updated 3 years ago
- This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utili…☆187Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SimPET is a framework intended to setup and launch PET imaging Monte Carlo simulations on a simple way. It uses popular tools such as Sim…☆13Apr 24, 2026Updated 2 months ago
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Oct 22, 2024Updated last year
- Simple Atas-Based Segmentation☆12Aug 11, 2020Updated 5 years ago
- Cardiac Image Multi-Atlas Segmentation pipeline (CIMAS)☆53Feb 13, 2017Updated 9 years ago
- ☆15Sep 28, 2024Updated last year
- ☆14Oct 4, 2024Updated last year
- ☆17Dec 16, 2019Updated 6 years ago
- Tools to examine image registration and tracking errors.☆11Sep 11, 2014Updated 11 years ago
- Convert T score brain statistical map to Z score map☆19Jan 25, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python utilities for medical image and surface-based analysis☆40May 22, 2026Updated last month
- Mouse brain network analysis of rs-fMRI and DTI data using graph theory☆10Jan 16, 2026Updated 5 months ago
- Processing Pipeline for Natural Object Dataset (NOD)☆12Jul 17, 2023Updated 2 years ago
- Microstructure Diffusion Toolbox☆60Mar 4, 2024Updated 2 years ago
- ☆20Sep 27, 2018Updated 7 years ago
- Python package to read Heidelberg Spectralis files☆16Jun 30, 2025Updated last year
- PET Unified Pipeline☆25Oct 13, 2020Updated 5 years ago