DaehwanKimLab / tophatLinks
Spliced read mapper for RNA-Seq
☆92Updated 2 years ago
Alternatives and similar repositories for tophat
Users that are interested in tophat are comparing it to the libraries listed below
Sorting:
- BEDOPS: high-performance genomic feature operations☆359Updated 9 months ago
- A tool set for short variant discovery in genetic sequence data.☆204Updated 4 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆129Updated 5 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- SV detection from paired end reads mapping☆118Updated 6 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆176Updated 6 years ago
- Documentation and description of AWS iGenomes S3 resource.☆120Updated last year
- Biopieces is a bioinformatic framework of tools easily used and easily created.☆143Updated 7 years ago
- A powerful toolset for genome arithmetic.☆142Updated 4 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆182Updated 7 years ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆238Updated 4 years ago
- VarDict☆201Updated 2 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 5 months ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- A flexible framework for rapid genome analysis and interpretation☆319Updated 3 years ago
- Text Only Genome Viewer!☆230Updated last week
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆213Updated 5 years ago
- UCSC command line bioinformatic utilities☆188Updated last year
- ABRA2☆95Updated 3 years ago
- Platypus Variant Caller☆108Updated last year
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆148Updated 4 years ago
- Simple FASTQ quality assessment using Python☆109Updated 4 years ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆165Updated this week
- GATK RNA-Seq Variant Calling in Nextflow☆138Updated 3 years ago
- ☆81Updated 7 years ago