DaehwanKimLab / tophatLinks
Spliced read mapper for RNA-Seq
☆92Updated 2 years ago
Alternatives and similar repositories for tophat
Users that are interested in tophat are comparing it to the libraries listed below
Sorting:
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- SV detection from paired end reads mapping☆118Updated 6 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆128Updated 5 years ago
- VarDict☆201Updated 2 years ago
- A tool set for short variant discovery in genetic sequence data.☆204Updated 4 years ago
- BEDOPS: high-performance genomic feature operations☆356Updated 8 months ago
- Documentation and description of AWS iGenomes S3 resource.☆119Updated last year
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆148Updated 4 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 6 years ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆163Updated 3 weeks ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆182Updated 7 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 4 months ago
- Microassembly based somatic variant caller for NGS data☆154Updated 3 years ago
- UCSC command line bioinformatic utilities☆188Updated last year
- Biopieces is a bioinformatic framework of tools easily used and easily created.☆144Updated 7 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 3 years ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- A powerful toolset for genome arithmetic.☆142Updated 4 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆114Updated 6 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- Tools for processing and analyzing structural variants.☆156Updated 3 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- MuTect -- Accurate and sensitive cancer mutation detection☆101Updated 2 years ago
- Count bases in BAM/CRAM files☆322Updated 3 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆157Updated 3 years ago
- ABRA2☆95Updated 3 years ago
- ☆82Updated 7 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Updated last year
- A flexible framework for rapid genome analysis and interpretation☆317Updated 3 years ago
- Structural variation and indel detection by local assembly☆250Updated 3 months ago