DART – a fast and accurate RNA-seq mapper with a divide-and-conquer strategy
☆12Jun 4, 2020Updated 6 years ago
Alternatives and similar repositories for Dart
Users that are interested in Dart are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Kart: A divide-and-conquer algorithm for NGS read mapping with high error tolerance☆26May 21, 2020Updated 6 years ago
- Wrappers around NGS peak callers to both call peaks and run IDR☆11Aug 2, 2013Updated 13 years ago
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- Applying IDR analysis to Homer peaks.☆19May 8, 2020Updated 6 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Aug 27, 2018Updated 8 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Fast in-silico normalization algorithm for NGS data☆25Nov 1, 2021Updated 4 years ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated 2 years ago
- common useful script☆34Jun 30, 2026Updated 3 months ago
- Error correction for Illumina RNA-seq reads☆66Jan 4, 2026Updated 9 months ago
- Annotate DNA sequences for Gene Ontology terms☆40Sep 11, 2025Updated last year
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Nov 14, 2025Updated 11 months ago
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 7 years ago
- CircAST is a computational tool for circular RNA full-length assembly and quantification using RNA-Seq data.☆10Jun 17, 2021Updated 5 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆10Oct 29, 2020Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆12Feb 14, 2023Updated 3 years ago
- ☆11Dec 3, 2013Updated 12 years ago
- Romulus: Robust multi-state identification of transcription factor binding sites from DNase-seq data☆10Mar 6, 2019Updated 7 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Mar 22, 2021Updated 5 years ago
- Tools for working with UCSC super pathway☆10May 19, 2015Updated 11 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Mar 5, 2012Updated 14 years ago
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆27Mar 31, 2026Updated 6 months ago
- *UNOFFICIAL, UNMAINTAINED and OUTDATED*: This was an unofficial archive of GMAP-GSNAP releases. Please use the original website for curr…☆34Nov 1, 2015Updated 10 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rank Aggregation Algorithms☆13Jul 22, 2014Updated 12 years ago
- ORF prediction using python☆10Aug 24, 2021Updated 5 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆12Apr 13, 2026Updated 6 months ago
- mrsFAST: micro-read substitution-only Fast Alignment Search Tool☆27Sep 22, 2020Updated 6 years ago
- Web Application Development with R Using Shiny - Third Edition, published by Packt☆12Apr 11, 2021Updated 5 years ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 9 years ago
- An alignment tool for optical mapping data☆10May 29, 2020Updated 6 years ago
- ☆11Mar 5, 2025Updated last year
- ☆11Oct 23, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast, sensitive and accurate protein remote homology search on GPUs☆15May 6, 2024Updated 2 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 10 years ago
- FTP object storage service python MIT License☆11Jan 16, 2021Updated 5 years ago
- SeqMonk NGS visualisation and analysis tool☆51Mar 31, 2026Updated 6 months ago
- ☆16Jul 7, 2025Updated last year
- NGS perl modules☆10Updated this week
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 4 years ago