An epithelium simulation library
☆65Feb 4, 2026Updated last month
Alternatives and similar repositories for tyssue
Users that are interested in tyssue are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simulation platform of animal embryogenesis☆21Jun 19, 2022Updated 3 years ago
- Simulates vertex model with an additional motility force☆10Mar 21, 2017Updated 9 years ago
- ☆12Jun 29, 2021Updated 4 years ago
- This is an older version of cytosim, a cytoskeleton simulation engine☆29Nov 2, 2021Updated 4 years ago
- Interacting Active Surfaces☆10Jul 12, 2022Updated 3 years ago
- Interactive, particle-based physics, chemistry and biology modeling and simulation environment☆25Jul 14, 2025Updated 8 months ago
- Soft Active Matter on Surfaces☆31Apr 16, 2025Updated 11 months ago
- Chaste - Cancer Heart And Soft Tissue Environment - main public repository.☆144Mar 9, 2026Updated 2 weeks ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago
- Chaste - Cancer Heart And Soft Tissue Environment - main public repository☆17Aug 4, 2016Updated 9 years ago
- ☆14Jan 25, 2024Updated 2 years ago
- GPU-accelerated image processing for everyone☆57Jul 4, 2024Updated last year
- Code for the paper: Image Denoising and the Generative Accumulation of Photons☆22Aug 2, 2023Updated 2 years ago
- An R package for the analysis and interpretation of cell migration tracks.☆14Sep 19, 2025Updated 6 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- ☆21Sep 9, 2021Updated 4 years ago
- GPU-accelerated simulations of Voronoi and vertex models of cells. Initial version published in Computer Physics Communications: https://…☆24Jul 10, 2025Updated 8 months ago
- A stable diffusion demo for napari☆11Dec 15, 2023Updated 2 years ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Mar 16, 2026Updated last week
- TensorFlow-based classifier for microscope image focus quality.☆18Jun 14, 2022Updated 3 years ago
- A napari Plugin for visualisaton of pixel values over time (t+ nD) as graphs.☆13Apr 24, 2024Updated last year
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- ☆16Dec 8, 2022Updated 3 years ago
- ☆13May 1, 2025Updated 10 months ago
- A self-supervised denoising algorithm.☆28Apr 6, 2024Updated last year
- PSFj - Know your microscope fluorescence☆24Mar 6, 2020Updated 6 years ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆23Apr 10, 2023Updated 2 years ago
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆13Oct 13, 2025Updated 5 months ago
- Spheroid models of morphogenesis for the GPU.☆46Oct 12, 2025Updated 5 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30May 1, 2025Updated 10 months ago
- ☆52May 1, 2025Updated 10 months ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated last month
- ☆14Sep 29, 2020Updated 5 years ago
- 2D and 3D image deconvolution with python☆15Sep 20, 2024Updated last year
- CLIJ is deprecated. Visit CLIJ2☆56Jun 12, 2021Updated 4 years ago
- Efficient graph data structures and algorithms for fast slicing, visualization, and editing☆13Dec 1, 2025Updated 3 months ago
- Model-based morphometrics in Python☆12Updated this week