DamCB / tyssue
An epithelium simulation library
☆59Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for tyssue
- Spheroid models of morphogenesis for the GPU.☆39Updated last year
- Simulation platform of animal embryogenesis☆20Updated 2 years ago
- FluoRender is an interactive rendering tool for confocal microscopy data visualization.☆41Updated this week
- This is an older version of cytosim, a cytoskeleton simulation engine☆27Updated 3 years ago
- MCell Monte Carlo Simulator of Cellular Microphysiology☆33Updated 8 months ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆27Updated this week
- Python / C++ based particle reaction-diffusion simulator☆52Updated 2 years ago
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Updated 2 years ago
- Create 3D/4D animations using a natural language-based syntax☆58Updated last year
- CompuCell3D public source code repository☆63Updated last week
- Interactive, particle-based physics, chemistry and biology modeling and simulation environment☆18Updated this week
- ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection☆24Updated 2 weeks ago
- under construction☆14Updated 7 years ago
- ☆16Updated last year
- Library for producing and processing on the Adaptive Particle Representation (APR).☆48Updated last week
- A python script editor plugin for napari☆11Updated last year
- ClearVolume is a real-time live 3D visualization library designed for high-end volumetric microscopes such as SPIM and DLSM microscopes. …☆44Updated last year
- CLIJ is deprecated. Visit CLIJ2☆56Updated 3 years ago
- GPU accelerated volume rendering / processing in Python☆117Updated 5 years ago
- ☆10Updated 3 years ago
- CPM implementation in pure JavaScript☆30Updated 3 weeks ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated 2 months ago
- Software for Quantifying Mitochondrial Content in Live Cells☆25Updated 4 months ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Updated 4 years ago
- Integrated Cell project implemented in pytorch☆43Updated last year
- Collection of mathematical morphology methods and plugins for ImageJ☆101Updated last week
- Rule-based modeling framework☆59Updated last month
- A fast and cross-platform image analysis framework for fluorescence time-lapse microscopy and bioimage informatics.☆43Updated 4 months ago
- TensorFlow Deconvolution for Microscopy Data☆90Updated 2 years ago
- Legacy project superseded by https://github.com/morphonets/SNT☆11Updated 3 years ago