ibivu / PRALINELinks
Next-generation PRALINE sequence alignment program.
☆10Updated 6 years ago
Alternatives and similar repositories for PRALINE
Users that are interested in PRALINE are comparing it to the libraries listed below
Sorting:
- antimicrobial peptide prediction in R☆33Updated 7 months ago
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- ☆31Updated 3 years ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated 2 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 5 months ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 months ago
- Omics data analysis☆15Updated 4 months ago
- CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.☆20Updated 9 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆30Updated last year
- metabolic heatmap☆20Updated 6 years ago
- Reference-guided multiple sequence alignment of viral genomes☆70Updated last month
- Scalable Maximum Likelihood Estimation of Phylogenetic Models☆16Updated 5 months ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- ☆24Updated 3 months ago
- DeepSig - Predictor of signal peptides in proteins based on deep learning☆26Updated 2 years ago
- A simple command-line tool to download data from Joint Genome Institute databases☆52Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆57Updated 4 years ago
- Open source short linear motif discovery and sequence analysis☆24Updated 10 months ago
- From metagenomes to epitopes and beyond☆13Updated 2 months ago
- A command line tool to identify and annotate small proteins in microbial sequencing datasets.☆24Updated 2 years ago
- Parse NCBI CD-search results to find and visualise the domain architecture of secondary metabolite synthases☆24Updated 2 years ago
- An R package designed for drawing gene arrow maps☆84Updated 2 weeks ago
- ☆31Updated 3 weeks ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 4 years ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated last month
- Associated code for EvoWeaver publication☆15Updated 2 months ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆11Updated 3 weeks ago