hpcaitech / FastFoldLinks
Optimizing AlphaFold Training and Inference on GPU Clusters
☆610Updated last year
Alternatives and similar repositories for FastFold
Users that are interested in FastFold are comparing it to the libraries listed below
Sorting:
- An open-source platform for developing protein models beyond AlphaFold.☆403Updated last year
- OmegaFold Release Code☆602Updated 2 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆560Updated last year
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,218Updated 3 weeks ago
- Official release of the ProGen models☆683Updated 2 years ago
- Trainable AlphaFold implementation in JAX☆159Updated 3 years ago
- An all-atom protein structure dataset for machine learning.☆356Updated last year
- To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released☆1,630Updated 3 years ago
- An implementation of the DeepMind's AlphaFold based on PyTorch for research☆401Updated 4 years ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆369Updated last year
- A trainable PyTorch reproduction of AlphaFold 3.☆1,396Updated last week
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆172Updated last year
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆659Updated 6 months ago
- Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch☆801Updated last week
- Remote protein homology detection suite.☆602Updated 3 months ago
- Ankh: Optimized Protein Language Model☆237Updated 5 months ago
- GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics☆137Updated last month
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆159Updated 2 years ago
- A collection of *fold* tools☆300Updated 4 months ago
- Protein Graph Library☆1,145Updated last month
- A generative model for programmable protein design☆783Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆269Updated last year
- ☆77Updated 3 years ago
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,386Updated 7 months ago
- ☆92Updated last year
- ProSPr: Protein Structure Prediction☆420Updated 3 years ago
- ☆773Updated 6 months ago
- A package to predict protein inter-residue geometries from sequence data☆219Updated 4 years ago
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆738Updated 7 months ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,276Updated 6 months ago