Alternatives and similar repositories for FastFold

Users that are interested in FastFold are comparing it to the libraries listed below

• dptech-corp / Uni-Fold
  An open-source platform for developing protein models beyond AlphaFold.
  ☆401Updated last year
• HeliXonProtein / OmegaFold
  OmegaFold Release Code
  ☆600Updated 2 years ago
• aqlaboratory / openfold
  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
  ☆3,200Updated 2 months ago
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆556Updated last year
• lucidrains / alphafold2
  To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  ☆1,626Updated 3 years ago
• jonathanking / sidechainnet
  An all-atom protein structure dataset for machine learning.
  ☆356Updated last year
• Urinx / alphafold_pytorch
  An implementation of the DeepMind's AlphaFold based on PyTorch for research
  ☆400Updated 4 years ago
• dptech-corp / Uni-Fold-jax
  Trainable AlphaFold implementation in JAX
  ☆159Updated 3 years ago
• salesforce / progen
  Official release of the ProGen models
  ☆678Updated 2 years ago
• bytedance / Protenix
  A trainable PyTorch reproduction of AlphaFold 3.
  ☆1,387Updated last week
• ramanathanlab / genslm
  GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics
  ☆137Updated 2 weeks ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆366Updated last year
• kyegomez / Open-AF3
  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
  ☆799Updated 3 weeks ago
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,370Updated 6 months ago
• Zuricho / ParallelFold
  Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…
  ☆170Updated last year
• microsoft / evodiff
  Generation of protein sequences and evolutionary alignments via discrete diffusion models
  ☆652Updated 5 months ago
• DeepGraphLearning / torchdrug
  A powerful and flexible machine learning platform for drug discovery
  ☆1,548Updated last year
• a-r-j / graphein
  Protein Graph Library
  ☆1,142Updated last week
• generatebio / chroma
  A generative model for programmable protein design
  ☆773Updated last year
• baker-laboratory / RoseTTAFold-All-Atom
  ☆765Updated 5 months ago
• soedinglab / hh-suite
  Remote protein homology detection suite.
  ☆598Updated 3 months ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆300Updated 3 months ago
• lucidrains / chroma-pytorch
  Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch
  ☆158Updated 2 years ago
• biomap-research / xTrimoMultimer
  ☆77Updated 3 years ago
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆267Updated last year
• nadavbra / protein_bert
  ☆559Updated 7 months ago
• agemagician / Ankh
  Ankh: Optimized Protein Language Model
  ☆236Updated 5 months ago
• deepmodeling / Uni-Fold
  ☆92Updated last year
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆503Updated 2 years ago
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆838Updated 3 weeks ago