Alternatives and similar repositories for FastFold:

Users that are interested in FastFold are comparing it to the libraries listed below

• dptech-corp / Uni-Fold
  An open-source platform for developing protein models beyond AlphaFold.
  ☆380Updated 7 months ago
• HeliXonProtein / OmegaFold
  OmegaFold Release Code
  ☆564Updated 2 years ago
• aqlaboratory / openfold
  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
  ☆2,901Updated 2 months ago
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆534Updated last year
• jonathanking / sidechainnet
  An all-atom protein structure dataset for machine learning.
  ☆347Updated 11 months ago
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,172Updated 5 months ago
• bytedance / Protenix
  A trainable PyTorch reproduction of AlphaFold 3.
  ☆937Updated this week
• dptech-corp / Uni-Fold-jax
  Trainable AlphaFold implementation in JAX
  ☆159Updated 2 years ago
• a-r-j / graphein
  Protein Graph Library
  ☆1,062Updated 2 weeks ago
• lucidrains / alphafold2
  To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  ☆1,591Updated 2 years ago
• Urinx / alphafold_pytorch
  An implementation of the DeepMind's AlphaFold based on PyTorch for research
  ☆393Updated 4 years ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆347Updated 8 months ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆293Updated 5 months ago
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,158Updated 6 months ago
• agemagician / ProtTrans
  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…
  ☆1,177Updated 3 weeks ago
• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆488Updated this week
• lightdock / lightdock
  Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
  ☆320Updated 2 months ago
• microsoft / evodiff
  Generation of protein sequences and evolutionary alignments via discrete diffusion models
  ☆556Updated 2 weeks ago
• lucidrains / chroma-pytorch
  Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch
  ☆158Updated 2 years ago
• songlab-cal / tape
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆677Updated 2 years ago
• baker-laboratory / RoseTTAFold-All-Atom
  ☆692Updated 6 months ago
• salesforce / provis
  Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."
  ☆304Updated last year
• DeepGraphLearning / torchdrug
  A powerful and flexible machine learning platform for drug discovery
  ☆1,471Updated 6 months ago
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆681Updated 2 months ago
• RosettaCommons / RoseTTAFold
  This package contains deep learning models and related scripts for RoseTTAFold
  ☆2,086Updated last year
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆476Updated last year
• kyegomez / AlphaFold3
  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
  ☆779Updated last week
• generatebio / chroma
  A generative model for programmable protein design
  ☆717Updated 10 months ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆345Updated last year
• gjoni / trRosetta
  A package to predict protein inter-residue geometries from sequence data
  ☆213Updated 3 years ago