Alternatives and similar repositories for FastFold

Users that are interested in FastFold are comparing it to the libraries listed below

• dptech-corp / Uni-Fold
  An open-source platform for developing protein models beyond AlphaFold.
  ☆397Updated last year
• HeliXonProtein / OmegaFold
  OmegaFold Release Code
  ☆589Updated 2 years ago
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆547Updated last year
• lucidrains / alphafold2
  To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  ☆1,609Updated 2 years ago
• aqlaboratory / openfold
  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
  ☆3,051Updated 2 months ago
• Urinx / alphafold_pytorch
  An implementation of the DeepMind's AlphaFold based on PyTorch for research
  ☆397Updated 4 years ago
• jonathanking / sidechainnet
  An all-atom protein structure dataset for machine learning.
  ☆353Updated last year
• dptech-corp / Uni-Fold-jax
  Trainable AlphaFold implementation in JAX
  ☆159Updated 2 years ago
• salesforce / progen
  Official release of the ProGen models
  ☆655Updated last year
• bytedance / Protenix
  A trainable PyTorch reproduction of AlphaFold 3.
  ☆1,215Updated this week
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆361Updated last year
• microsoft / evodiff
  Generation of protein sequences and evolutionary alignments via discrete diffusion models
  ☆615Updated last month
• kyegomez / Open-AF3
  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
  ☆790Updated 2 weeks ago
• a-r-j / graphein
  Protein Graph Library
  ☆1,111Updated 2 weeks ago
• ramanathanlab / genslm
  GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics
  ☆132Updated 10 months ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆295Updated 9 months ago
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,285Updated 2 months ago
• Zuricho / ParallelFold
  Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…
  ☆171Updated last year
• agemagician / Ankh
  Ankh: Optimized Protein Language Model
  ☆228Updated last month
• generatebio / chroma
  A generative model for programmable protein design
  ☆746Updated last year
• soedinglab / hh-suite
  Remote protein homology detection suite.
  ☆577Updated 8 months ago
• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆511Updated 4 months ago
• RosettaCommons / RoseTTAFold
  This package contains deep learning models and related scripts for RoseTTAFold
  ☆2,158Updated last year
• gjoni / trRosetta
  A package to predict protein inter-residue geometries from sequence data
  ☆215Updated 3 years ago
• sacdallago / bio_embeddings
  Get protein embeddings from protein sequences
  ☆493Updated 2 years ago
• agemagician / ProtTrans
  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…
  ☆1,225Updated last month
• deepmodeling / Uni-Fold
  ☆92Updated last year
• biomap-research / xTrimoMultimer
  ☆77Updated 2 years ago
• dellacortelab / prospr
  ProSPr: Protein Structure Prediction
  ☆419Updated 2 years ago
• nadavbra / protein_bert
  ☆539Updated 3 months ago