hpcaitech / FastFoldLinks
Optimizing AlphaFold Training and Inference on GPU Clusters
☆612Updated last year
Alternatives and similar repositories for FastFold
Users that are interested in FastFold are comparing it to the libraries listed below
Sorting:
- An open-source platform for developing protein models beyond AlphaFold.☆413Updated last year
- OmegaFold Release Code☆607Updated 3 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆562Updated 2 years ago
- An all-atom protein structure dataset for machine learning.☆358Updated last year
- Trainable AlphaFold implementation in JAX☆159Updated 3 years ago
- An implementation of the DeepMind's AlphaFold based on PyTorch for research☆401Updated 5 years ago
- Official release of the ProGen models☆692Updated 2 years ago
- To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released☆1,632Updated 3 years ago
- A trainable PyTorch reproduction of AlphaFold 3.☆1,474Updated last month
- RoseTTAFold2 protein/nucleic acid complex prediction☆373Updated last year
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,262Updated last month
- Remote protein homology detection suite.☆612Updated 5 months ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆663Updated 3 weeks ago
- Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…☆173Updated last year
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆160Updated 3 years ago
- Get protein embeddings from protein sequences☆505Updated 2 years ago
- Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch☆802Updated last week
- A generative model for programmable protein design☆795Updated last year
- A collection of *fold* tools☆302Updated 5 months ago
- ☆77Updated 3 years ago
- ProSPr: Protein Structure Prediction☆419Updated 3 years ago
- GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics☆140Updated 3 months ago
- Protein Graph Library☆1,158Updated last week
- ☆571Updated 10 months ago
- Official code repository of "BERTology Meets Biology: Interpreting Attention in Protein Language Models."☆305Updated 9 months ago
- Ankh: Optimized Protein Language Model☆238Updated 7 months ago
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,426Updated 9 months ago
- Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集☆1,098Updated 5 months ago
- A package to predict protein inter-residue geometries from sequence data☆222Updated 4 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆272Updated last year