Alternatives and similar repositories for FastFold

Users that are interested in FastFold are comparing it to the libraries listed below

• dptech-corp / Uni-Fold
  An open-source platform for developing protein models beyond AlphaFold.
  ☆392Updated 10 months ago
• HeliXonProtein / OmegaFold
  OmegaFold Release Code
  ☆584Updated 2 years ago
• aqlaboratory / openfold
  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
  ☆2,997Updated 2 weeks ago
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆539Updated last year
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,238Updated last week
• jonathanking / sidechainnet
  An all-atom protein structure dataset for machine learning.
  ☆350Updated last year
• dptech-corp / Uni-Fold-jax
  Trainable AlphaFold implementation in JAX
  ☆159Updated 2 years ago
• Urinx / alphafold_pytorch
  An implementation of the DeepMind's AlphaFold based on PyTorch for research
  ☆395Updated 4 years ago
• lucidrains / alphafold2
  To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  ☆1,599Updated 2 years ago
• bytedance / Protenix
  A trainable PyTorch reproduction of AlphaFold 3.
  ☆1,107Updated 3 weeks ago
• a-r-j / graphein
  Protein Graph Library
  ☆1,091Updated 2 months ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆358Updated 11 months ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆293Updated 7 months ago
• Zuricho / ParallelFold
  Modified version of Alphafold to divide CPU part (MSA and template searching) and GPU part. This can accelerate Alphafold when predicting…
  ☆168Updated last year
• salesforce / progen
  Official release of the ProGen models
  ☆649Updated last year
• lucidrains / chroma-pytorch
  Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch
  ☆158Updated 2 years ago
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,262Updated 9 months ago
• RosettaCommons / RFdiffusion
  Code for running RFdiffusion
  ☆2,171Updated last month
• kyegomez / AlphaFold3
  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
  ☆784Updated 3 weeks ago
• gjoni / trRosetta
  A package to predict protein inter-residue geometries from sequence data
  ☆216Updated 3 years ago
• soedinglab / hh-suite
  Remote protein homology detection suite.
  ☆569Updated 6 months ago
• generatebio / chroma
  A generative model for programmable protein design
  ☆733Updated last year
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆725Updated this week
• agemagician / ProtTrans
  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…
  ☆1,201Updated 3 months ago
• bjing2016 / alphaflow
  AlphaFold Meets Flow Matching for Generating Protein Ensembles
  ☆438Updated 4 months ago
• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆506Updated 2 months ago
• baker-laboratory / RoseTTAFold-All-Atom
  ☆709Updated 9 months ago
• deepmodeling / Uni-Fold
  ☆92Updated last year
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆256Updated last year
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆357Updated last year