To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
☆1,636Oct 29, 2022Updated 3 years ago
Alternatives and similar repositories for alphafold2
Users that are interested in alphafold2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Open source code for AlphaFold 2.☆14,818Apr 22, 2026Updated 4 months ago
- This package contains deep learning models and related scripts for RoseTTAFold☆2,258Feb 15, 2024Updated 2 years ago
- Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2☆3,420Dec 16, 2025Updated 8 months ago
- An implementation of the DeepMind's AlphaFold based on PyTorch for research☆402Jan 23, 2021Updated 5 years ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,169Feb 7, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An all-atom protein structure dataset for machine learning.☆366Mar 16, 2024Updated 2 years ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,323May 22, 2025Updated last year
- Making Protein folding accessible to all!☆2,893Updated this week
- Attempt at reproduction of AlphaFold2☆99Jul 30, 2026Updated last month
- code for the SE3 Transformers paper: https://arxiv.org/abs/2006.10503☆584Apr 3, 2026Updated 4 months ago
- Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorc…☆172Nov 25, 2022Updated 3 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆565Dec 12, 2023Updated 2 years ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆744Dec 11, 2022Updated 3 years ago
- List of papers about Proteins Design using Deep Learning☆1,970Aug 15, 2026Updated 2 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design☆83Aug 27, 2021Updated 5 years ago
- Listing of papers about machine learning for proteins.☆1,715May 31, 2024Updated 2 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 4 years ago
- A package to predict protein inter-residue geometries from sequence data☆222Sep 27, 2021Updated 4 years ago
- OmegaFold Release Code☆627Dec 12, 2022Updated 3 years ago
- Code for running RFdiffusion☆3,028Jul 15, 2026Updated last month
- Implementation of SE3-Transformers for Equivariant Self-Attention, in Pytorch. This specific repository is geared towards integration wit…☆334Aug 28, 2025Updated last year
- Remote protein homology detection suite.☆629Aug 12, 2025Updated last year
- Code for the ProteinMPNN paper☆1,835Aug 14, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Implementation of Alphafold 3 from Google Deepmind in Pytorch☆1,693Aug 10, 2026Updated 3 weeks ago
- Optimizing AlphaFold Training and Inference on GPU Clusters☆616Jul 16, 2024Updated 2 years ago
- Making Protein Design accessible to all via Google Colab!☆934Updated this week
- Trainable AlphaFold implementation in JAX☆158Aug 6, 2022Updated 4 years ago
- Protein Graph Library☆1,191Aug 17, 2026Updated last week
- Implementation of E(n)-Transformer, which incorporates attention mechanisms into Welling's E(n)-Equivariant Graph Neural Network☆226Jun 2, 2024Updated 2 years ago
- Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein…☆290Dec 17, 2024Updated last year
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,571May 2, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集☆1,119Mar 31, 2026Updated 5 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆380Jun 3, 2024Updated 2 years ago
- Implementation of E(n)-Equivariant Graph Neural Networks, in Pytorch☆533Dec 6, 2024Updated last year
- MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.☆772Jun 19, 2024Updated 2 years ago
- Standardized data set for machine learning of protein structure☆918Nov 18, 2020Updated 5 years ago
- Generative Models for Graph-Based Protein Design☆291Dec 24, 2020Updated 5 years ago
- Protein hallucination and inpainting with RoseTTAFold☆285Mar 30, 2023Updated 3 years ago