Alternatives and similar repositories for PaddleHelix

Users that are interested in PaddleHelix are comparing it to the libraries listed below

• deepmodeling / Uni-Mol
  Official Repository for the Uni-Mol Series Methods
  ☆1,051Updated 8 months ago
• dptech-corp / Uni-Fold
  An open-source platform for developing protein models beyond AlphaFold.
  ☆413Updated last year
• mims-harvard / TDC
  Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science
  ☆1,200Updated 6 months ago
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,619Updated last year
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,430Updated 9 months ago
• kexinhuang12345 / DeepPurpose
  A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
  ☆1,126Updated last year
• gnina / gnina
  A deep learning framework for molecular docking
  ☆843Updated last month
• baker-laboratory / RoseTTAFold-All-Atom
  ☆784Updated 8 months ago
• kyegomez / Open-AF3
  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
  ☆802Updated last week
• awslabs / dgl-lifesci
  Python package for graph neural networks in chemistry and biology
  ☆789Updated 2 years ago
• agemagician / ProtTrans
  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…
  ☆1,290Updated 8 months ago
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆877Updated 2 months ago
• songlab-cal / tape
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆732Updated 3 years ago
• microsoft / AI2BMD
  AI-powered ab initio biomolecular dynamics simulation
  ☆567Updated 11 months ago
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆562Updated 2 years ago
• Peldom / papers_for_protein_design_using_DL
  List of papers about Proteins Design using Deep Learning
  ☆1,876Updated last week
• AspirinCode / papers-for-molecular-design-using-DL
  List of Molecular and Material design using Generative AI and Deep Learning
  ☆913Updated 2 weeks ago
• HeliXonProtein / OmegaFold
  OmegaFold Release Code
  ☆608Updated 3 years ago
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆820Updated 3 weeks ago
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆654Updated last year
• salesforce / progen
  Official release of the ProGen models
  ☆692Updated 2 years ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆403Updated 2 years ago
• nadavbra / protein_bert
  ☆571Updated 10 months ago
• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆534Updated 11 months ago
• lucidrains / alphafold2
  To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  ☆1,633Updated 3 years ago
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆1,000Updated 5 months ago
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆728Updated last year
• generatebio / chroma
  A generative model for programmable protein design
  ☆795Updated last year
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆1,162Updated last month
• a-r-j / graphein
  Protein Graph Library
  ☆1,158Updated 2 weeks ago