Alternatives and similar repositories for PaddleHelix:

Users that are interested in PaddleHelix are comparing it to the libraries listed below

• deepmodeling / Uni-Mol
  Official Repository for the Uni-Mol Series Methods
  ☆779Updated last month
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,158Updated 6 months ago
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,172Updated 5 months ago
• songlab-cal / tape
  Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…
  ☆677Updated 2 years ago
• awslabs / dgl-lifesci
  Python package for graph neural networks in chemistry and biology
  ☆744Updated last year
• dptech-corp / Uni-Fold
  An open-source platform for developing protein models beyond AlphaFold.
  ☆380Updated 7 months ago
• AspirinCode / papers-for-molecular-design-using-DL
  List of Molecular and Material design using Generative AI and Deep Learning
  ☆739Updated this week
• molecularsets / moses
  Molecular Sets (MOSES): A Benchmarking Platform for Molecular Generation Models
  ☆862Updated 7 months ago
• kyegomez / AlphaFold3
  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
  ☆779Updated last week
• microsoft / AI2BMD
  AI-powered ab initio biomolecular dynamics simulation
  ☆464Updated this week
• DeepGraphLearning / torchdrug
  A powerful and flexible machine learning platform for drug discovery
  ☆1,471Updated 6 months ago
• Peldom / papers_for_protein_design_using_DL
  List of papers about Proteins Design using Deep Learning
  ☆1,564Updated this week
• mims-harvard / TDC
  Therapeutics Commons (TDC-2): Multimodal Foundation for Therapeutic Science
  ☆1,047Updated this week
• kexinhuang12345 / DeepPurpose
  A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
  ☆1,006Updated 8 months ago
• gnina / gnina
  A deep learning framework for molecular docking
  ☆665Updated 2 months ago
• bytedance / Protenix
  A trainable PyTorch reproduction of AlphaFold 3.
  ☆937Updated this week
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆534Updated last year
• agemagician / ProtTrans
  ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…
  ☆1,177Updated 3 weeks ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆347Updated 8 months ago
• HeliXonProtein / OmegaFold
  OmegaFold Release Code
  ☆564Updated 2 years ago
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆624Updated 8 months ago
• westlake-repl / SaProt
  Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
  ☆403Updated 2 weeks ago
• lucidrains / alphafold2
  To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  ☆1,591Updated 2 years ago
• yangkky / Machine-learning-for-proteins
  Listing of papers about machine learning for proteins.
  ☆1,581Updated 8 months ago
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆307Updated last year
• a-r-j / graphein
  Protein Graph Library
  ☆1,062Updated 2 weeks ago
• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆488Updated this week
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆681Updated 2 months ago
• baker-laboratory / RoseTTAFold-All-Atom
  ☆692Updated 6 months ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆345Updated last year