crondonm / TrackingR
Python code for "Tracking R of COVID-19 A New Real-Time Estimation Using the Kalman Filter".
☆26Updated last year
Related projects ⓘ
Alternatives and complementary repositories for TrackingR
- Updates to the synthetic contact matrices☆36Updated last year
- The Flexible Epidemic Modeling Pipeline☆9Updated this week
- European Covid-19 Forecast Hub.☆48Updated 3 weeks ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆94Updated 2 months ago
- Data and Codebook for the HIT-COVID Project☆21Updated 3 years ago
- COVID-19 Scenario Modeling Hub☆63Updated 3 months ago
- SEIR transmission model of COVID-19. Documentation at:☆50Updated 9 months ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 4 years ago
- OpenABM-Covid19: an agent-based model for modelling the spread of SARS-CoV-2 (coronavirus) and control interventions for the Covid-19 epi…☆114Updated last year
- This is the raw data repository (policy record format) of the CoronaNet project on government responses to the COVID-19 pandemic.☆98Updated 11 months ago
- Modelling transmission dynamics of COVID-19, while accounting for presymptomatic infectiousness, time-varying ascertainment rates, transm…☆21Updated 4 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆115Updated this week
- epidemia package☆47Updated 2 years ago
- Mathematical modelling of different strategies to reopen schools in the UK post COVID-19☆13Updated 2 years ago
- Bayesian modeling of COVID-19☆30Updated last year
- Inferring high-resolution human mixing patterns for disease modeling☆41Updated last year
- Semiparametric Bayesian Inference for the Transmission Dynamics of COVID-19 with a State-Space Model☆9Updated 4 years ago
- This is the data repository for the Imperial College London YouGov Covid 19 Behaviour Tracker Data Hub.☆87Updated 2 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated last year
- Bayesian estimation of Rt (C code)☆13Updated 4 years ago
- Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers☆22Updated 3 years ago
- Systematic dataset of US sub-national Covid-19 policy data☆69Updated last year
- A meta-population model for COVID19 in China☆12Updated 4 years ago
- National and subnational estimates of the time-varying reproduction number for Covid-19☆34Updated 2 years ago
- ☆19Updated last year
- Repository for all scripts required to replicate the CFR analysis for paper submission.☆71Updated 3 years ago
- Analysis code and data for COVID-19 age-specific clinical fraction☆22Updated 4 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated 11 months ago
- German and Polish COVID-19 Forecast Hub☆28Updated last year
- ☆23Updated 3 years ago