cdcepi / Flusight-forecast-data
☆40Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for Flusight-forecast-data
- ☆27Updated this week
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated last year
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆44Updated this week
- FluSight Forecast Submissions☆18Updated 6 months ago
- R package to implement and visualize several epidemiological forecasting methods.☆21Updated 4 months ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated 11 months ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated 2 months ago
- SEIR transmission model of COVID-19. Documentation at:☆50Updated 9 months ago
- R package for deriving social mixing matrices from survey data.☆38Updated this week
- Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)☆23Updated 3 years ago
- ☆36Updated 2 weeks ago
- SEIR+ model☆20Updated 2 months ago
- Utility functions for the COVID-19 forecast hub☆17Updated 9 months ago
- Inferring high-resolution human mixing patterns for disease modeling☆41Updated last year
- Source code for the EpiEstim app.☆31Updated 4 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆15Updated this week
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆24Updated 2 years ago
- Report templates and helper functions for applied epidemiology☆40Updated 2 weeks ago
- An R package to accompany the Epidemiology R Handbook, a free open-access R reference manual for applied epidemiologists and public healt…☆40Updated 2 months ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆57Updated last week
- An R package with Dynamic Models of infectious diseases☆29Updated last week
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated last year
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆17Updated last week
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated last year
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆52Updated last month
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago
- ☆32Updated 3 years ago
- Bayesian SEIR model to estimate the effects of social-distancing on COVID-19☆28Updated 3 years ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆94Updated 2 months ago
- Assists in making queries to CDC Wonder API☆23Updated 8 months ago