wpgp / BEARmod
Basic Epidemic, Activity, and Response COVID-19 model
☆31Updated 4 years ago
Alternatives and similar repositories for BEARmod:
Users that are interested in BEARmod are comparing it to the libraries listed below
- R package for deriving social mixing matrices from survey data.☆38Updated last week
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Updates to the synthetic contact matrices☆36Updated last year
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- Repository to the R package nowcaster, nowcasting with INLA☆19Updated last month
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated this week
- ☆20Updated 2 years ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 5 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆11Updated 2 years ago
- European Covid-19 Forecast Hub.☆48Updated 6 months ago
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆16Updated 2 months ago
- epidemia package☆48Updated 2 years ago
- ☆17Updated 4 years ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Some code for monkeypox☆10Updated 2 years ago
- R Package for individual based epidemiological models☆30Updated 8 months ago
- Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.☆12Updated 2 years ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated 4 months ago
- ☆23Updated 4 years ago
- Infectious disease model library and utilities☆14Updated 2 years ago
- Inferring high-resolution human mixing patterns for disease modeling☆45Updated 2 years ago
- R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)☆11Updated 7 months ago
- An R package for Bayes Linear emulation and history matching.☆16Updated 2 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated this week
- SEIR transmission model of COVID-19. Documentation at:☆51Updated last year