Alternatives and similar repositories for curatedPCaData

Users that are interested in curatedPCaData are comparing it to the libraries listed below

• jokergoo / cola
  A General Framework for Consensus Partitioning
  ☆63Updated 6 months ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆59Updated 9 months ago
• niaid / covid19-time-resolved
  This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…
  ☆15Updated 4 years ago
• plger / pipeComp
  A R framework for pipeline benchmarking, with application to single-cell RNAseq
  ☆41Updated 3 years ago
• kordastilab / ImmunoCluster
  ☆27Updated 4 years ago
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆21Updated 2 months ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• cmap / cmapR
  Tools for manipulating annotated data matrices
  ☆92Updated 3 years ago
• kevinblighe / scDataviz
  scDataviz: single cell dataviz and downstream analyses
  ☆63Updated 3 years ago
• dswatson / bioplotr
  Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines
  ☆14Updated 2 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 4 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆37Updated 2 years ago
• liuhong-jia / scAnno
  ☆25Updated 3 months ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆45Updated 2 months ago
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆32Updated 3 years ago
• wwylab / DeMixT
  ☆36Updated last year
• kevinrue / velociraptor
  Toolkit for Single-Cell Velocity
  ☆58Updated last month
• niaid / dsb
  Normalize CITEseq Data
  ☆66Updated 4 months ago
• zdq0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆29Updated 2 years ago
• icbi-lab / Immunophenogram
  ☆41Updated 7 years ago
• montilab / BS831
  Course Materials for Genomics Data Mining
  ☆22Updated last week
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated last week
• markrobinsonuzh / cytofWorkflow
  ☆16Updated last year
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆27Updated 4 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆46Updated last year
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year
• tidyomics / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated last month
• markowetzlab / CINSignatureQuantification
  Quantifying copy number signatures from absolute copy number profiles
  ☆25Updated last month
• KechrisLab / multiMiR
  Development repository for the multiMiR database's R API
  ☆20Updated last year
• easygsea / eVITTA
  eVITTA: an easy Visualization and Inference Toolbox for Transcriptome Analysis
  ☆12Updated last year