IGS / Chiron
Tools and utilities for running Dockerized metagenomics tools in the Cloud
☆22Updated 5 years ago
Alternatives and similar repositories for Chiron:
Users that are interested in Chiron are comparing it to the libraries listed below
- List of computational resources for analyzing microbial sequencing data.☆68Updated last year
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 4 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆88Updated 4 months ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 8 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated last year
- Create a tree using Mash distances☆159Updated last year
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆89Updated 2 weeks ago
- CoGe (Comparative Genomics) Platform☆44Updated 3 years ago
- Maximum likelihood demultiplexing☆46Updated last month
- A method for variant graph genotyping based on exact alignment of k-mers☆86Updated 6 years ago
- ViraPipe is distributed Apache Spark based metagenome analytics pipeline for scalable detection of pathogens from NGS data☆16Updated 6 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Workflows I find helpful for fungal genome annotation☆21Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆85Updated last month
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- Super small biological datasets for unit testing☆60Updated 5 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 4 months ago
- Histosketching Using Little Kmers☆56Updated last year
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 5 months ago
- Benchmark datasets for WGS analysis☆37Updated 5 years ago
- Visualization of the pan-genome output by panX☆63Updated last year
- Reduced Alphabet based Protein similarity Search☆40Updated 4 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Simple bacterial assembly and annotation pipeline☆70Updated this week
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆125Updated 4 years ago