IGS / ChironLinks
Tools and utilities for running Dockerized metagenomics tools in the Cloud
☆22Updated 6 years ago
Alternatives and similar repositories for Chiron
Users that are interested in Chiron are comparing it to the libraries listed below
Sorting:
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 5 years ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆75Updated last month
- SEER, reimplemented in python 🐍🔮☆125Updated 5 months ago
- viral-ngs: complete pipelines☆67Updated this week
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆93Updated last year
- Python3 scripts to manipulate FASTA and FASTQ files☆72Updated 7 months ago
- Used to trim off the primer sequence from mutiplex amplicon sequencing☆24Updated last year
- ☆107Updated last week
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 5 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 5 months ago
- The Biological Observation Matrix (BIOM) Format Project☆95Updated last week
- Fasten toolkit, for streaming operations on fastq files☆80Updated 2 weeks ago
- List of computational resources for analyzing microbial sequencing data.☆67Updated 4 months ago
- ☆36Updated 6 months ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Updated 6 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆38Updated last week
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆86Updated last week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆18Updated 10 months ago
- Maximum likelihood demultiplexing☆48Updated 8 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 6 months ago
- ☆27Updated 8 months ago
- NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.☆64Updated this week
- Efficient handling of FASTQ files from Python☆51Updated 3 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆91Updated 4 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- A collection of modules and sub-workflows for Nextflow☆28Updated last week
- Monitor computational workflows in real time☆73Updated last year
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆94Updated 5 months ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago