IGS / ChironLinks
Tools and utilities for running Dockerized metagenomics tools in the Cloud
☆22Updated 6 years ago
Alternatives and similar repositories for Chiron
Users that are interested in Chiron are comparing it to the libraries listed below
Sorting:
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11Updated 5 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated last month
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆91Updated 2 months ago
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆92Updated last week
- Visualization of the pan-genome output by panX☆63Updated last month
- Dynamic, adaptive sampling during nanopore sequencing☆34Updated 2 months ago
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆17Updated 6 months ago
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- SEER, reimplemented in python 🐍🔮☆122Updated last month
- NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.☆59Updated last week
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 3 months ago
- cDNA read preprocessing☆76Updated 11 months ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- MAPLE - a new approximate approach for maximum likelihood phylogenetics at short divergence.☆48Updated last month
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Fasten toolkit, for streaming operations on fastq files☆79Updated 3 months ago
- ☆31Updated 3 months ago
- Benchmark datasets for WGS analysis☆39Updated 5 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Updated 6 years ago
- List of computational resources for analyzing microbial sequencing data.☆68Updated last month
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- evaluating vcf parsing libraries☆19Updated 3 years ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆75Updated last month
- Eyes on your (genomic) data☆37Updated 2 years ago
- CoGe (Comparative Genomics) Platform☆44Updated 3 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Updated 4 years ago
- Fast spliced aligner with low memory requirements☆41Updated 9 years ago