IGS / ChironLinks
Tools and utilities for running Dockerized metagenomics tools in the Cloud
☆22Updated 6 years ago
Alternatives and similar repositories for Chiron
Users that are interested in Chiron are comparing it to the libraries listed below
Sorting:
- SEER, reimplemented in python 🐍🔮☆123Updated 3 months ago
- EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.☆75Updated last week
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆92Updated 3 months ago
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆50Updated 4 years ago
- viral-ngs: complete pipelines☆66Updated last week
- An efficient index for the colored, compacted, de Bruijn graph☆110Updated 10 months ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆98Updated 4 months ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆130Updated last year
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Updated 6 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- The Biological Observation Matrix (BIOM) Format Project☆95Updated last week
- Fasten toolkit, for streaming operations on fastq files☆79Updated 4 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆91Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 4 months ago
- compositional data analysis toolbox☆59Updated 2 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Updated 3 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 3 months ago
- List of computational resources for analyzing microbial sequencing data.☆68Updated 2 months ago
- Genome inference from a population reference graph☆97Updated 5 months ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆87Updated this week
- cDNA read preprocessing☆77Updated last year
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆92Updated last year
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Python3 scripts to manipulate FASTA and FASTQ files☆71Updated 5 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- An Oxford Nanopore Basecaller☆71Updated 4 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.☆60Updated last week
- Scripts, utilities and programs for genomic bioinformatics.☆83Updated 2 months ago