germinateplatform / germinate-vueLinks
Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.
☆17Updated last week
Alternatives and similar repositories for germinate-vue
Users that are interested in germinate-vue are comparing it to the libraries listed below
Sorting:
- A versatile, fully open-source pipeline to extract phenotypic measurements from plant images☆42Updated last month
- A statically generated catalog of available Snakemake workflows☆34Updated this week
- Scripts and code for Kākāpō genomic data☆14Updated last year
- This repository contains curricular material, lecture notes, labs, assignments, exams, code, solutions from the Spring 2022 version of BI…☆13Updated 3 years ago
- Open Plant Pathology website☆21Updated 8 months ago
- open source bagel recipe; let's raise the quality of bagels worldwide☆27Updated 7 months ago
- The code behind the Sol Genomics Network, Cassavabase and other Breedbase websites☆67Updated this week
- a complete reference book for treeio, tidytree and ggtree packages☆104Updated 2 years ago
- R front-end for TASSEL 5☆31Updated 2 months ago
- R package supporting interactive data access on BOLD☆12Updated this week
- A Landscape Genomic Analysis Toolkit in R☆20Updated 3 weeks ago
- Flavonoids are specialized metabolites in plants that have numerous functions including protection against abiotic stresses, pigmentation…☆18Updated last month
- A library for working with phylogenetic and population genetic data.☆63Updated 2 months ago
- Access sequences from the 1000 Plant Initiative (1KP)☆13Updated 2 years ago
- Python Breeding Optimizer and Simulator: A Python library for simulating and optimizing breeding pipelines.☆10Updated 6 months ago
- ☆12Updated last year
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11Updated last year
- deep learning prediction of geographic location from individual genome sequences☆51Updated 5 months ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆47Updated 2 years ago
- 生信常用分析☆11Updated 4 years ago
- Project Organization and Management for Genomics☆25Updated this week
- Vignettes for Population Genetics in R☆25Updated 4 years ago
- Build and test new apps for the KBase platform☆28Updated 4 months ago
- deploy a snakemake pipeline directly from version control (under development)☆24Updated 3 months ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆29Updated last year
- script that convert vcf file into genotype data matrix to input DIYABC program.☆11Updated 9 years ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24Updated 2 months ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆11Updated 7 years ago
- A pipeline for phylogenetic diversity analysis of GBIF-mediated data☆13Updated 3 weeks ago
- a short graduate population biology course☆12Updated 2 years ago