germinateplatform / germinate-vue
Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.
☆16Updated this week
Alternatives and similar repositories for germinate-vue:
Users that are interested in germinate-vue are comparing it to the libraries listed below
- Open Plant Pathology website☆22Updated 3 months ago
- The code behind the Sol Genomics Network, Cassavabase and other Breedbase websites☆67Updated this week
- Access sequences from the 1000 Plant Initiative (1KP)☆13Updated last year
- A versatile, fully open-source pipeline to extract phenotypic measurements from plant images☆41Updated 2 years ago
- A Landscape Genomic Analysis Toolkit in R☆15Updated last week
- Pipeline for the identification of (coding) gene structures in draft genomes.☆26Updated 8 months ago
- A statically generated catalog of available Snakemake workflows☆32Updated this week
- Reference genome quality scores☆19Updated 4 years ago
- the hierfstat package☆24Updated 2 months ago
- Codes for calculating delta, a phylogenetic analog of the Shannon entropy for measuring the degree of phylogenetic signal between a categ…☆25Updated 3 years ago
- map Illumina metagenomes to genomes!☆38Updated 2 months ago
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆13Updated 5 months ago
- Java software to analyse phylogeny-trait correlations in discrete traits, accounting for phylogenetic uncertainty via posterior sampling.☆11Updated 7 years ago
- Scripts and code for Kākāpō genomic data☆14Updated last year
- The Ross-Ibarra's lab documentation☆26Updated 2 years ago
- ☆18Updated 8 years ago
- Process raw haplotagging data, from raw sequences to phased haplotypes, batteries included.☆15Updated this week
- A tool to root phylogenies☆19Updated 4 months ago
- CoalHMM☆22Updated 11 years ago
- A Python package for landscape genomic simulation☆10Updated 3 months ago
- FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as …☆65Updated 3 years ago
- VCF Observer is a VCF file analysis, comparison, and visualization tool.☆15Updated 3 weeks ago
- deep learning prediction of geographic location from individual genome sequences☆47Updated last week
- Program to run the SOWH test (likelihood-based test used to compare tree topologies which are not specified a priori)☆11Updated 8 months ago
- Dual-extraction method for phenotypic prediction and functional gene mining of complex traits☆11Updated 3 months ago
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆28Updated last year
- a short graduate population biology course☆12Updated last year
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆18Updated 4 months ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆10Updated last year
- open source bagel recipe; let's raise the quality of bagels worldwide☆26Updated 2 months ago