Proof of concept code from Gretel.ai and Illumina using generative neural networks to create synthetic versions of mouse genotype and phenotype data.
β33Jan 19, 2022Updated 4 years ago
Alternatives and similar repositories for synthetic-data-genomics
Users that are interested in synthetic-data-genomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Generative models to automatically anonymize data to meet GDPR & CCPA standards.β30Jan 24, 2023Updated 3 years ago
- π A curated list of resources dedicated to synthetic dataβ142Jul 29, 2022Updated 4 years ago
- A comprehensive Model Context Protocol (MCP) server providing advanced access to the UniProt protein database.β19Dec 21, 2025Updated 7 months ago
- Generates synthetic cancer genomes with different contamination level and intra-tumor heterogeneity and devoid of any synthetic elementβ11Sep 21, 2020Updated 5 years ago
- Synthetic data generators for structured and unstructured text, featuring differentially private learning.β684Jun 24, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer β’ AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A utility for splitting mixed origin NGS readsβ10Jun 1, 2021Updated 5 years ago
- β11May 26, 2023Updated 3 years ago
- A curated list of awesome resources, papers, datasets, and tools related to Genomic LLMs. This repository aims to provide a comprehensiveβ¦β18Aug 7, 2024Updated last year
- π΅οΈ NeMo Anonymizer: Detect and protect PII through context-aware replacement and rewritingβ106Updated this week
- Python toolbox for multi-omics data mapping and analysisβ28Apr 13, 2023Updated 3 years ago
- The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seβ¦β22Updated this week
- density growing clusteringβ10Dec 2, 2021Updated 4 years ago
- β10Feb 9, 2026Updated 5 months ago
- Julia utilities for handling VCF filesβ19Apr 2, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification oβ¦β17Jul 15, 2026Updated 2 weeks ago
- ππ¬ Bioinformatics add-on for Orange3β24Jun 22, 2026Updated last month
- Standalone shiny server container for viewing CellChat objectβ14Feb 18, 2021Updated 5 years ago
- A Rmarkdown to SoS Notebook converterβ11Mar 26, 2026Updated 4 months ago
- Ascertained Sequentially Markovian Coalescentβ19Oct 22, 2025Updated 9 months ago
- Jupyter Notebooks on Azure for Genomics Data Analysisβ112May 9, 2025Updated last year
- Reconstruction of spatial context of gene expression with optimal transportβ11Mar 14, 2019Updated 7 years ago
- Instantiate objects and call functions using dictionary configs in Python using Genos.β10Jun 19, 2023Updated 3 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cellsβ¦β30Oct 16, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Network visualization webapp.β14Mar 6, 2023Updated 3 years ago
- Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.β41Mar 17, 2026Updated 4 months ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh groupβ¦β15Aug 8, 2024Updated last year
- Open Genes is a database of human genes associated with aging and lifespan.β10Jul 22, 2026Updated last week
- β19Jun 24, 2025Updated last year
- Course in population genomics at BiRCβ12Mar 18, 2026Updated 4 months ago
- Code for the paper "Generating and designing DNA with deep generative models" (arXiv:1712.06148)β42Apr 14, 2018Updated 8 years ago
- β13Dec 20, 2025Updated 7 months ago
- Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file.β24Jan 21, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocolβ18Nov 9, 2021Updated 4 years ago
- Extracting disease-specific genomic coordinates from GWAS catalogβ21Nov 29, 2019Updated 6 years ago
- Short (less than 2 hour) intro to RAG workshop exercisesβ17Jul 19, 2024Updated 2 years ago
- A Python Based Library to Calculate Statistical Estimators (Sn, Qn, MAD, IQR)β15Jun 21, 2024Updated 2 years ago
- R Interface to the NCBI SRA metadataβ23Nov 19, 2018Updated 7 years ago
- β17Jul 22, 2026Updated last week
- Accompanying codebase for neuroscope.io, a website for displaying max activating dataset examples for language model neuronsβ15Feb 13, 2023Updated 3 years ago