Proof of concept code from Gretel.ai and Illumina using generative neural networks to create synthetic versions of mouse genotype and phenotype data.
☆33Jan 19, 2022Updated 4 years ago
Alternatives and similar repositories for synthetic-data-genomics
Users that are interested in synthetic-data-genomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 📖 A curated list of resources dedicated to synthetic data☆142Jul 29, 2022Updated 4 years ago
- Generates synthetic cancer genomes with different contamination level and intra-tumor heterogeneity and devoid of any synthetic element☆11Sep 21, 2020Updated 5 years ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 10 years ago
- A utility for splitting mixed origin NGS reads☆10Jun 1, 2021Updated 5 years ago
- ☆11May 26, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Fast python code to merge paired-end reads☆13Oct 29, 2021Updated 4 years ago
- ☆17Sep 9, 2022Updated 3 years ago
- A curated list of awesome resources, papers, datasets, and tools related to Genomic LLMs. This repository aims to provide a comprehensive…☆18Aug 7, 2024Updated 2 years ago
- Code used for mouse single cell RNAseq testis atlas☆12Nov 28, 2020Updated 5 years ago
- ☆16Jun 5, 2022Updated 4 years ago
- density growing clustering☆10Dec 2, 2021Updated 4 years ago
- ☆12Aug 3, 2025Updated last year
- Differential Privacy Protection against MembershipInference Attack on Machine Learning for Genomic Data☆19Aug 4, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Julia utilities for handling VCF files☆19Apr 2, 2024Updated 2 years ago
- MaveDB API☆17Updated this week
- ☆12Sep 20, 2019Updated 6 years ago
- Standalone shiny server container for viewing CellChat object☆14Feb 18, 2021Updated 5 years ago
- Ascertained Sequentially Markovian Coalescent☆19Oct 22, 2025Updated 9 months ago
- A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.☆45Jul 28, 2026Updated 3 weeks ago
- iLASH - IBD Estimation Using Locality Sensitive Hashing☆18Nov 6, 2025Updated 9 months ago
- Tree visualization using TnT☆14Jan 4, 2021Updated 5 years ago
- ☆17Jul 25, 2026Updated 3 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Reconstruction of spatial context of gene expression with optimal transport☆11Mar 14, 2019Updated 7 years ago
- ☆15Jun 1, 2019Updated 7 years ago
- Instantiate objects and call functions using dictionary configs in Python using Genos.☆10Jun 19, 2023Updated 3 years ago
- 🌳 WALD Stack Demo 🏎️☆33Sep 18, 2024Updated last year
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆30Oct 16, 2021Updated 4 years ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆14Aug 8, 2024Updated 2 years ago
- Open Genes is a database of human genes associated with aging and lifespan.☆10Jul 22, 2026Updated 3 weeks ago
- ☆18Jun 24, 2025Updated last year
- Course in population genomics at BiRC☆12Mar 18, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Code for the paper "Generating and designing DNA with deep generative models" (arXiv:1712.06148)☆42Apr 14, 2018Updated 8 years ago
- ☆13Dec 20, 2025Updated 7 months ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Nov 9, 2021Updated 4 years ago
- Extracting disease-specific genomic coordinates from GWAS catalog☆21Nov 29, 2019Updated 6 years ago
- Short (less than 2 hour) intro to RAG workshop exercises☆17Jul 19, 2024Updated 2 years ago
- R Interface to the NCBI SRA metadata☆23Nov 19, 2018Updated 7 years ago
- Recomb-Mix: a local ancestry inference tool☆17Aug 6, 2026Updated last week