gretelai / synthetic-data-genomicsLinks
Proof of concept code from Gretel.ai and Illumina using generative neural networks to create synthetic versions of mouse genotype and phenotype data.
☆34Updated 3 years ago
Alternatives and similar repositories for synthetic-data-genomics
Users that are interested in synthetic-data-genomics are comparing it to the libraries listed below
Sorting:
- The advanced implementation for BioChatter, using Next.js☆15Updated 8 months ago
- GenoML (genoml2) is an open source Python package. It is an automated machine learning (autoML) platform for genomics data☆33Updated 3 months ago
- Python toolbox for multi-omics data mapping and analysis☆25Updated 2 years ago
- jinja2-enabled jupyter notebooks☆37Updated 2 weeks ago
- The light frontend for BioChatter, in pure Python☆54Updated 2 months ago
- Easy genetic ancestry predictions in Python☆64Updated 3 months ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Updated last year
- ☆15Updated 5 years ago
- Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …☆79Updated last year
- Pandas ExtensionDtypes for dealing with genomics data☆47Updated 4 months ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆35Updated last year
- a super basic tutorial on how to create a pytorch models for raw DNA sequences☆25Updated 3 years ago
- Defense Against the Dark Arts☆79Updated last year
- Automated machine learning for analyzing, interpreting, and designing biological sequences☆171Updated 2 years ago
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆69Updated 2 years ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆86Updated last week
- SQL support plugin for Nextflow☆32Updated 3 weeks ago
- Make machine learning simpler with Galaxy☆11Updated last year
- ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov…☆81Updated 2 months ago
- Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.☆89Updated 3 months ago
- Course materials for the IBioIC Introduction to Bioinformatics training course☆12Updated 8 years ago
- An option to spin cost effective EMR clusters in AWS with Hail and JupyterNotebook installed☆17Updated 5 years ago
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆28Updated 2 years ago
- Explainable AI for Bioinformatics☆125Updated 2 years ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆56Updated 4 months ago
- ☆16Updated 5 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated 2 years ago
- Knowledge distillation on DNABERT (DistilBERT and MiniLM techniques) for promoter identification.☆24Updated 2 years ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago