Alternatives and similar repositories for biochatter-light

Users that are interested in biochatter-light are comparing it to the libraries listed below

• bowang-lab / IntegrAO
  Integrate Any Omics: Towards genome-wide data integration for patient stratification
  ☆55Updated last month
• biocypher / clinical-knowledge-graph
  ☆18Updated last year
• wikipathways / pywikipathways
  Python Client Package for WikiPathways
  ☆21Updated 3 weeks ago
• biocypher / open-targets
  ☆15Updated last month
• ncbi-nlp / pubtator-gpt
  ☆26Updated last year
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆70Updated 3 months ago
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆32Updated last year
• biocypher / biochatter
  Backend library for conversational AI in biomedicine
  ☆168Updated last week
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆69Updated 2 years ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆62Updated last year
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆48Updated last month
• Bayer-Group / cellenium
  Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA sequencing).
  ☆27Updated last year
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆32Updated 3 months ago
• biocypher / biochatter-next
  The advanced implementation for BioChatter, using Next.js
  ☆13Updated 5 months ago
• Metaboverse / Metaboverse
  Visualization and analysis platform for metabolic data and network pattern recognition
  ☆39Updated 3 months ago
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆42Updated 2 weeks ago
• tatonetti-lab / onsides
  A resource of adverse drug effects extracted from FDA structured product labels
  ☆78Updated this week
• biocypher / project-template
  Template for creating a BioCypher-driven knowledge graph
  ☆12Updated 3 weeks ago
• mikelkou / fava
  Functional Associations using Variational Autoencoders
  ☆39Updated 4 months ago
• krassowski / easy-entrez
  Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on …
  ☆79Updated last year
• EBIvariation / CMAT
  ClinVar Mapping and Annotation Toolkit
  ☆19Updated last week
• czi-ai / transcriptformer
  ☆51Updated 2 weeks ago
• devCellPy-Team / devCellPy
  devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.
  ☆26Updated last year
• BaderLab / EPIC
  This is the public repository for the EPIC tool.
  ☆17Updated 2 years ago
• idekerlab / llm_evaluation_for_gene_set_interpretation
  Code space for 'Evaluation of large language models for discovery of gene set function'
  ☆36Updated 6 months ago
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆54Updated last week
• gpp-rnd / rs3
  Package to Score Sequences using Rule Set 3
  ☆11Updated last year
• zou-group / CellVoyager
  ☆45Updated 2 weeks ago
• YuLab-SMU / biomedical-knowledge-mining-book
  Biomedical knowledge mining using GOSemSim and clusterProfiler
  ☆77Updated 2 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago