ghoresh11 / sling

Related projects ⓘ

Alternatives and complementary repositories for sling

• ghoresh11 / twilight
  All scripts used for the analysis of the twilight of the pan-genome, and scripts available for others to apply similar analysis
  ☆14Updated 3 years ago
• apcamargo / prodigal-gv
  A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes
  ☆32Updated last year
• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆35Updated last year
• MigleSur / GenAPI
  Gene Absence Presence Identification tool.
  ☆26Updated last year
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆88Updated 2 months ago
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆49Updated last month
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆52Updated 2 months ago
• linsalrob / PhiSpy
  Prediction of prophages from bacterial genomes
  ☆71Updated last year
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆58Updated 2 years ago
• MDU-PHL / abritamr
  A pipeline for running AMRfinderPlus and collating results into functional classes
  ☆71Updated 3 months ago
• boulund / phaster_scripts
  Small utility script to submit genomes to PHASTER for phage detection
  ☆23Updated 3 years ago
• mw55309 / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆53Updated last year
• brinkmanlab / islandpath
  IslandPath standalone software
  ☆31Updated last year
• gbouras13 / dnaapler
  Reorients assembled microbial sequences
  ☆98Updated last month
• yosuken / MAGRE
  ☆12Updated 3 years ago
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆18Updated 8 months ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆49Updated this week
• tseemann / phastaf
  Identify phage regions in bacterial genomes for masking purposes
  ☆30Updated 5 years ago
• deprekate / PHACTS
  A simple program to classify the lifestyle of phages.
  ☆16Updated last year
• jhawkey / IS_mapper
  IS mapping software
  ☆51Updated 2 years ago
• aldertzomer / RFPlasmid
  Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
  ☆48Updated 7 months ago
• carolzhou / multiPhATE
  Throughput PhATE processing of draft or finished phage genomes
  ☆14Updated 3 years ago
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆51Updated 6 months ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆36Updated last month
• a-h-b / binny
  ☆28Updated last year
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆39Updated 3 months ago
• Kalan-Lab / lsaBGC
  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
  ☆37Updated 3 months ago
• deprekate / PHANOTATE
  PHANOTATE: a tool to annotate phage genomes.
  ☆69Updated last month
• rrwick / Assembly-Dereplicator
  A tool for removing redundant genomes from a set of assemblies
  ☆68Updated last year
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆28Updated last year