ghoresh11 / sling
a tool to search for linked gene arrays in bacterial datasets
☆9Updated 4 years ago
Alternatives and similar repositories for sling:
Users that are interested in sling are comparing it to the libraries listed below
- All scripts used for the analysis of the twilight of the pan-genome, and scripts available for others to apply similar analysis☆14Updated 4 years ago
- Gene Absence Presence Identification tool.☆26Updated last week
- A python library for predicting phage lifestyle based on genome sequence☆37Updated last year
- ☆12Updated 3 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆35Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 9 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- A simple program to classify the lifestyle of phages.☆17Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 3 years ago
- post processing of bacterial pangenome gene presence/absence matrices☆59Updated last month
- ☆24Updated 6 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated last month
- Throughput PhATE processing of draft or finished phage genomes☆14Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 11 months ago
- This program is designed for annotation of antimicrobal resistance(AMR), transposon(Tn) and integron(In) in bacteria.☆20Updated last year
- ☆38Updated 3 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated last week
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- ☆31Updated last year
- Bifrost graph gene caller.☆93Updated 6 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated 11 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 3 weeks ago
- Discover and annotate the virome☆39Updated 5 months ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆12Updated last year
- Binning Virus Genomes from Metagenomes☆62Updated 2 years ago
- Taxonomic classification of viruses at Order and Family level☆20Updated 2 years ago
- Tools to analyze the differences and similarities between CRISPR arrays☆10Updated 3 months ago