gersteinlab / FunSeq2Links
A flexible framework to annotate and prioritize cancer somatic mutations.
☆8Updated 8 years ago
Alternatives and similar repositories for FunSeq2
Users that are interested in FunSeq2 are comparing it to the libraries listed below
Sorting:
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆23Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- DriverPower☆26Updated 4 months ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆12Updated last month
- A toolkit for working with ATAC-seq data.☆24Updated 11 months ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- ☆11Updated 2 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆14Updated 10 years ago
- ☆13Updated 7 years ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆41Updated last year
- ☆17Updated 4 years ago
- ☆8Updated 6 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 2 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆15Updated 4 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last week
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 4 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- Scripts used for the ACT paper☆12Updated 4 years ago
- ☆11Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated last week
- ☆17Updated 6 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year