genepattern / genepattern-serverLinks
The GenePattern Server web application
☆37Updated last month
Alternatives and similar repositories for genepattern-server
Users that are interested in genepattern-server are comparing it to the libraries listed below
Sorting:
- R package for bcbio RNA-seq analysis.☆62Updated last year
- Website for the precision medicine workshop☆45Updated 3 weeks ago
- This repository contains course materials from JAX-BD2K workshop.☆32Updated 6 years ago
- R package containing useful functions for mutational signature analysis☆86Updated last week
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆48Updated 2 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆95Updated last month
- Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19☆77Updated last year
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆53Updated 3 years ago
- A Python-based EGA download client☆108Updated last year
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.☆41Updated last week
- R package for genomic feature analysis and visualization☆79Updated 7 months ago
- Transcript quantification import for modular pipelines☆142Updated 2 months ago
- microRNA profiling pipeline☆79Updated 3 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Identifying recurrent mutations in cancer☆39Updated 4 years ago
- integrated RNA-seq Analysis Pipeline☆84Updated 6 years ago
- A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays☆30Updated 2 years ago
- reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE☆33Updated 4 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆66Updated 2 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆54Updated 4 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated 2 weeks ago
- CRISPRAnalyzeR: interactive analysis, annotation and documentation of pooled CRISPR screens☆81Updated 5 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- Fuji plot—a circos representation of multiple GWAS results—☆92Updated 6 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆81Updated 6 months ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆89Updated last month
- Differential Count Data Analysis Toolbox☆61Updated last year