galantelab / sideRETRO
A pipeline for detecting Somatic Insertion of DE novo RETROcopies
☆9Updated 5 months ago
Alternatives and similar repositories for sideRETRO:
Users that are interested in sideRETRO are comparing it to the libraries listed below
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated 9 months ago
- a lexicographically-based GTF/GFF sorter☆33Updated 8 months ago
- ☆17Updated last week
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated last month
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 10 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- ☆13Updated 3 years ago
- Unfazed by genomic variant phasing☆26Updated 11 months ago
- a pipeline for accurate detection of methylated cytosine and differentially methylated regions☆9Updated 9 years ago
- Structural variant pipeline☆17Updated 4 years ago
- structure detection program☆17Updated 5 months ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- Functions to compare a SV call sets against a truth set.☆29Updated 11 months ago
- ☆16Updated 3 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 4 months ago
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Updated last month
- Simulation toolbox for structural variations.☆9Updated 5 years ago
- A web-browser app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.☆10Updated 2 weeks ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 8 months ago
- SV genotyping with long reads☆40Updated last year
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆11Updated 5 months ago
- Transposable Element Finder - Detection of active transposable elements from NGS data☆9Updated this week
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆10Updated last month
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 weeks ago
- ☆25Updated last year
- Enabling differential allele-specific analysis☆11Updated 4 months ago