deepARG using deep semantic representation
☆10Nov 11, 2023Updated 2 years ago
Alternatives and similar repositories for deeparg2.0
Users that are interested in deeparg2.0 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deep…☆61Apr 30, 2026Updated 5 months ago
- http://huttenhower.sph.harvard.edu/waafle☆24Jun 16, 2026Updated 4 months ago
- ☆19Updated this week
- A comprehensive pipeline for short read metagenomic data☆25Aug 25, 2020Updated 6 years ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆27Nov 3, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Jun 9, 2020Updated 6 years ago
- A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning☆30Nov 20, 2023Updated 2 years ago
- A full-featured and high-performance (see benchmark) event loop that is loosely modelled after libevent, but without its limitations and …☆15Apr 13, 2026Updated 6 months ago
- A Deep Learning Model for Protein Function Prediction☆18Jul 31, 2020Updated 6 years ago
- Kraken extension to identify viral contigs☆10Dec 4, 2020Updated 5 years ago
- My Git mirror repo, it keeps syncing the official CVS repo every 24 hour.☆12May 15, 2026Updated 5 months ago
- Tools for assessing clustering robustness☆34Sep 27, 2026Updated 3 weeks ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆39Feb 26, 2023Updated 3 years ago
- Compute strain abundance in a defined microbial community☆10Jul 27, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Apr 4, 2023Updated 3 years ago
- ☆18Jun 30, 2026Updated 3 months ago
- ☆14Mar 18, 2023Updated 3 years ago
- SVG collection of lab equipment☆13Nov 28, 2022Updated 3 years ago
- ☆22Sep 4, 2020Updated 6 years ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Feb 3, 2024Updated 2 years ago
- ☆11Feb 9, 2024Updated 2 years ago
- Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.☆39Jun 18, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- JAMM Peak Finder for Sequencing Datasets☆29Mar 12, 2020Updated 6 years ago
- This repository contains training material developed by the Microbial Ecology Group to introduce researchers to the R programming languag…☆12Aug 9, 2021Updated 5 years ago
- Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles☆45Mar 26, 2024Updated 2 years ago
- A modern python package for semi-automated gel electrophoresis analysis (Agarose, PAGE, ...)☆13Oct 16, 2026Updated last week
- User Simulation for Conversational Recommendation☆19Jan 30, 2026Updated 8 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆43Sep 17, 2025Updated last year
- Main framework for ntuple production & analysis code.☆12May 21, 2024Updated 2 years ago
- A command-line tool for profiling CAZyme abundances in metagenomic datasets.☆44Updated this week
- AMPDeep: Hemolytic Activity Prediction of Antimicrobial Peptides using Transfer Learning☆12Aug 15, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆14Dec 24, 2025Updated 9 months ago
- Simple markup to web-friendly presentations that look great on mobile and on the big screen.☆20May 16, 2019Updated 7 years ago
- This is the source code for ARGs-OAP v2.0 construction☆13Aug 1, 2019Updated 7 years ago
- Pan-genome Analysis☆14May 4, 2025Updated last year
- raw data from tax-credit project☆14Sep 19, 2019Updated 7 years ago
- EnDED is a program that aims to detect environmentally-driven ("indirect") edges in an association network.☆10Dec 1, 2023Updated 2 years ago
- A pipeline for Bacterial Whole genome sequence data analysis☆15Jul 24, 2022Updated 4 years ago