GA4GH Refget specifications docs
☆16Nov 12, 2025Updated 5 months ago
Alternatives and similar repositories for refget
Users that are interested in refget are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python interface to the GenoLogics LIMS server via its REST API.☆11Mar 30, 2022Updated 4 years ago
- A library for Web Ontology Language in Python created using a bridge from horned-owl to python using PyO3.☆23Feb 11, 2026Updated 2 months ago
- A python package for showing JBrowse views☆27Jan 3, 2024Updated 2 years ago
- ClinVar Mapping and Annotation Toolkit☆20Mar 31, 2026Updated last week
- JSON validator derived from AJV supporting ontology and taxonomy validation.☆21May 22, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- GA4GH Variation Representation Python Implementation☆62Apr 6, 2026Updated last week
- Serialize JSON into a canonical format.☆17May 23, 2023Updated 2 years ago
- ☆16Mar 1, 2026Updated last month
- A web API and database for biological sample metadata☆22Updated this week
- The backend engine for the Chap Modeling Platform☆21Updated this week
- Nextflow pipeline for genome annotation of protein-coding genes☆16Dec 21, 2023Updated 2 years ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Feb 6, 2025Updated last year
- A crate for working with genomics chain files.☆15Mar 19, 2026Updated 3 weeks ago
- A modular, containerized pipeline for PRO-seq data processing☆11Mar 6, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Read, parse and operate different multiple input file formats with OpenVariant☆14Nov 28, 2025Updated 4 months ago
- Project code for BioHackathon Europe 2023.☆18Aug 20, 2024Updated last year
- CWL experimental grammar☆11Nov 16, 2025Updated 4 months ago
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Apr 6, 2026Updated last week
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Apr 1, 2026Updated last week
- Analyse RNA feature distributions.☆19Dec 16, 2024Updated last year
- Faultless AST for Open Biomedical Ontologies in Python.☆32Feb 2, 2026Updated 2 months ago
- Code generator for Pydantic Schemas☆16May 26, 2020Updated 5 years ago
- R package providing msgpack and websockets; demonstrates how to utilize Go libraries from R.☆25Oct 2, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Handy command line utility for Galaxy administrators☆24Mar 30, 2026Updated 2 weeks ago
- Serves a web interface and RESTful API for reference genome assets.☆12Updated this week
- R package to quickly obtain count vectors from indexed bam files☆15Jun 13, 2025Updated 10 months ago
- evaluating vcf parsing libraries☆19Mar 1, 2022Updated 4 years ago
- Creating virtual environments for R.☆17Oct 24, 2019Updated 6 years ago
- COVID19 profiling of lung tissue with imaging mass cytometry (IMC)☆11Mar 29, 2021Updated 5 years ago
- Annotating epigenetic variation among samples with region sets in R☆11Jan 18, 2025Updated last year
- Command line client for the TSD HTTP API☆18Feb 26, 2026Updated last month
- Materials for http://dib-training.readthedocs.org/en/pub/2015-11-09-docker.html☆14May 29, 2017Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A high-performance search engine for large-scale genomic interval datasets☆20Sep 1, 2021Updated 4 years ago
- Omnipy is a high level Python library for type-driven data wrangling and scalable workflow orchestration (under development)☆26Updated this week
- Bedfile perturbation tool☆17Mar 6, 2026Updated last month
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆17Jul 22, 2024Updated last year
- Reference Genome Independent Differential DNA Methylation Analysis☆11Aug 19, 2021Updated 4 years ago
- Biometric Open Source wristband☆16Oct 11, 2017Updated 8 years ago
- DEPRECATED Tools for manipulating cell expression format (CEF) files☆12Oct 10, 2017Updated 8 years ago