CNAG-Biomedical-Informatics / convert-phenoLinks
A software toolkit for the interconversion of standard data models for phenotypic data
☆15Updated last week
Alternatives and similar repositories for convert-pheno
Users that are interested in convert-pheno are comparing it to the libraries listed below
Sorting:
- Python Phenopacket Tools☆15Updated last month
- Repository for development of the genomic module of the CDM.☆23Updated 6 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated 2 years ago
- BioThings API framework - Making high-performance API for biological annotation data☆48Updated this week
- Workflow Execution Service Backend☆19Updated last week
- Beacon v2 Reference Implementation (API)☆18Updated 9 months ago
- phenol: Phenotype ontology library☆24Updated 3 weeks ago
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆22Updated 2 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- Class materials for the NIH HPC snakemake class☆15Updated last year
- Repo for advertising and organizing CIViC unconference/meeting activities☆10Updated 2 months ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Associations of genomic features, drugs and diseases☆48Updated 2 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Updated 3 years ago
- R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.☆15Updated last month
- ☆25Updated 4 years ago
- Data Standards Hackathon for NGS based typing.☆14Updated 3 weeks ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆25Updated last year
- Map your disease and phenotype terms to the Open Targets platform ontology☆21Updated last week
- SODAR: System for Omics Data Access and Retrieval☆15Updated this week
- API for linked biological knowledge☆66Updated 3 years ago
- Rna-seq pipeline, From FASTQ to differential expression analysis...☆20Updated 8 years ago
- Repository with information about the BioHackathon hosted in Paris in Nov 2018☆28Updated 4 years ago
- The WES API is a standard way to run and manage portable workflows.☆85Updated last month
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- A web application from the Raphael Lab for mutation annotation and genome interpretation.☆20Updated 7 years ago
- Python client for MyVariant.info web services.☆23Updated 8 months ago
- A R Bioconductor package for accessing MyGene.info services☆11Updated 7 years ago
- Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:☆17Updated last year