A software toolkit for the interconversion of standard data models for phenotypic data
☆15Updated this week
Alternatives and similar repositories for convert-pheno
Users that are interested in convert-pheno are comparing it to the libraries listed below
Sorting:
- Model Context Protocol (MCP) server for mapping clinical terminology to Observational Medical Outcomes Partnership (OMOP) concepts using …☆33Feb 19, 2026Updated last week
- Repository for the family history/pedigree project☆13Feb 8, 2023Updated 3 years ago
- Unified repository for the GA4GH Beacon v2 API standard☆32Feb 22, 2026Updated last week
- Beacon v2 Reference Implementation (API)☆18Dec 13, 2024Updated last year
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆16Feb 20, 2026Updated last week
- Repository for the GA4GH phenopacket schema☆96Jan 20, 2026Updated last month
- Python Phenopacket Tools☆16Nov 3, 2025Updated 3 months ago
- Documentation and tutorials on using AWS for biomedical research☆18May 3, 2025Updated 9 months ago
- Workflow Execution Service Backend☆20Feb 23, 2026Updated last week
- Medical action ontology☆63Jan 15, 2026Updated last month
- deploy a snakemake pipeline directly from version control (under development)☆25Feb 22, 2026Updated last week
- Clinical Whole Genome and Exome Sequencing Pipeline☆29Oct 27, 2025Updated 4 months ago
- hail-based pipelines for annotating variant callsets and exporting them to elasticsearch☆23Updated this week
- ☆24Nov 30, 2020Updated 5 years ago
- LinuxForHealth Data Flows☆26Jun 8, 2022Updated 3 years ago
- Introduction to Cloud Computing for Genomics☆21Updated this week
- ☆26Aug 7, 2019Updated 6 years ago
- ☆28Oct 5, 2018Updated 7 years ago
- For BioHackathon Europe 2021.☆30Nov 18, 2022Updated 3 years ago
- A serverless implementation of the FHIR standard that enables users to focus more on their business needs/uniqueness rather than the FHIR…☆39Jan 31, 2024Updated 2 years ago
- DEAPP shiny App☆30Jun 8, 2022Updated 3 years ago
- Collections of GA4GH phenopackets that represent individuals with Mendelian diseases.☆33Updated this week
- Calling star alleles in highly polymorphic pharmacogenes (e.g. CYP450 genes) by leveraging genome graph-based variant detection.☆35Oct 21, 2025Updated 4 months ago
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆36Jul 10, 2024Updated last year
- Git Repository for CPSC 230☆17Nov 17, 2022Updated 3 years ago
- Programmatically interact with Tamr☆11Jul 25, 2023Updated 2 years ago
- ☆15Jul 10, 2025Updated 7 months ago
- Genome scale metabolic models in SBML format☆10Nov 16, 2021Updated 4 years ago
- ☆10Jan 27, 2022Updated 4 years ago
- ☆14Jan 15, 2026Updated last month
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 4 months ago
- Lecture notes/book in progress on computing for conservation genomics☆39Jan 29, 2024Updated 2 years ago
- SVG based genome viewer written in javascript using D3☆33Jul 12, 2015Updated 10 years ago
- [under development] Tools for ETL into OMOP CDM and deployment of OHDSI toolstack☆39Nov 10, 2023Updated 2 years ago
- Backend for Dumpstermap.org, a collaborative world wide map to share dumpster locations for others to find.☆11Feb 2, 2026Updated 3 weeks ago
- El Blockchain Community Lab (BCL) es un punto de encuentro para cualquier persona interesada en la tecnología blockchain, sus aplicacione…☆15Sep 17, 2019Updated 6 years ago
- parse Grid Engine qstat job info list into a list of python dicts☆11May 19, 2022Updated 3 years ago
- A Nextflow workflow for HLA typing using HLA-HD☆14Jul 3, 2024Updated last year