CNAG-Biomedical-Informatics / convert-phenoLinks
A software toolkit for the interconversion of standard data models for phenotypic data
☆15Updated last month
Alternatives and similar repositories for convert-pheno
Users that are interested in convert-pheno are comparing it to the libraries listed below
Sorting:
- Python Phenopacket Tools☆15Updated 3 months ago
- Repository for development of the genomic module of the CDM.☆25Updated 6 years ago
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Updated 2 years ago
- Beacon v2 Reference Implementation (API)☆18Updated last year
- Repo for advertising and organizing CIViC unconference/meeting activities☆10Updated 6 months ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆33Updated 3 years ago
- Class materials for the NIH HPC snakemake class☆15Updated last year
- Subtyping tool for multi-omic data☆13Updated 3 years ago
- Unified repository for the GA4GH Beacon v2 API standard☆32Updated this week
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆27Updated last year
- Repository for the GA4GH phenopacket schema☆93Updated 2 weeks ago
- MatchMiner: An open source computational platform for matching genomic profiles to precision cancer medicine clinical trials☆46Updated 3 years ago
- Associations of genomic features, drugs and diseases☆48Updated 3 years ago
- An app and library for building, conversion, and validation of GA4GH Phenopackets.☆16Updated 7 months ago
- Workflow Execution Service Backend☆20Updated last week
- The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.☆83Updated 3 weeks ago
- LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.☆15Updated 3 years ago
- Consensus assembly and variant calling workflow.☆12Updated 10 years ago
- An open-source, cloud-ready web application for simplified deployment of big data workflows.☆36Updated 8 months ago
- FAIR Genomes semantic metadata model. The core is a YAML file, which is transformed into all other desired output formats.☆13Updated 3 months ago
- API for linked biological knowledge☆66Updated 3 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- Standard for describing and searching biomedical data developed by the Global Alliance for Genomics & Health.☆24Updated 2 years ago
- A collection of Python clients and accessory scripts for interacting with the Cromwell☆23Updated 3 years ago
- ☆26Updated 5 years ago
- Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integr…☆71Updated 3 months ago
- simplified searching, fetching, and parsing records from NCBI using their E-utilities interface☆63Updated last month
- R package for easy access, manipulation, and analysis of the Monarch Initiative or other KGX-formatted knowledge graphs.☆16Updated 2 months ago
- WDL plugin for pytest☆49Updated 2 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆70Updated 5 years ago