ga4gh / htsget-refserverLinks
Reference server implementation for the GA4GH HTSget API standard.
☆12Updated 2 years ago
Alternatives and similar repositories for htsget-refserver
Users that are interested in htsget-refserver are comparing it to the libraries listed below
Sorting:
- non-redundant, compressed, journalled, file-based storage for biological sequences☆47Updated 3 months ago
- Python client for GA4GH htsget protocol☆15Updated 3 years ago
- Workflow Description Language compiler for the DNAnexus platform☆42Updated 2 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Updated 5 years ago
- Benchmarking toolkit for variant calling☆48Updated 5 years ago
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆59Updated 2 years ago
- ALPACA is a caller for genomic variants (single nucleotide and small indels) from next-generation sequencing data that uses a novel algeb…☆23Updated last year
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 8 years ago
- ☆38Updated 2 months ago
- Efficient base quality score recalibrator for NGS data☆24Updated 10 years ago
- ☆36Updated 5 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Updated last year
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Transcript versions for HGVS libraries☆33Updated 3 months ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆71Updated this week
- WDL tools for parsing, type-checking, and more☆28Updated 5 months ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 7 years ago
- Aligner for sequencing data☆18Updated 7 years ago
- Genomic VCF to tab-separated values☆48Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- drunk on perbase pileups and lua expressions☆19Updated 2 months ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- ☆28Updated 8 years ago
- HGVS variant description extractor☆11Updated 5 years ago
- Implicit Interval Tree with Interpolation Index☆42Updated 3 years ago