ga4gh / htsget-refserver
Reference server implementation for the GA4GH HTSget API standard.
☆11Updated last year
Alternatives and similar repositories for htsget-refserver:
Users that are interested in htsget-refserver are comparing it to the libraries listed below
- ☆37Updated 4 years ago
- WDL tools for parsing, type-checking, and more☆25Updated 6 months ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 5 months ago
- ☆18Updated 7 years ago
- Graphite - Graph-based variant adjudication☆28Updated 3 years ago
- Workflow Description Language compiler for the DNAnexus platform☆40Updated last year
- Aligner for sequencing data☆18Updated 6 years ago
- Create WDL documentation using Markdown.☆27Updated this week
- ☆28Updated last year
- HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment☆34Updated 7 years ago
- High-level API for storing and querying sequence variant data☆20Updated 5 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆42Updated 3 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆10Updated 5 years ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Updated last year
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 4 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- Method for detecting STR expansions from short-read sequencing data☆62Updated 3 years ago
- CRAM format specification and java API for read data.☆58Updated 6 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆32Updated 5 years ago
- Tools for bam file processing☆55Updated 9 years ago
- Lossless VCF compression☆18Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆16Updated 5 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Updated 3 years ago
- Integrated Variant Caller☆17Updated 6 years ago