Alternatives and similar repositories for fasp-scripts:

Users that are interested in fasp-scripts are comparing it to the libraries listed below

• s-andrews / BamQC
  Mapped QC analysis program
  ☆44Updated 6 years ago
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 4 years ago
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆56Updated 4 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 4 years ago
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆105Updated 4 years ago
• macarthur-lab / gnomad_browser
  gnomAD browser pre-ASHG 2018
  ☆33Updated 4 years ago
• walaj / bxtools
  Tools for analyzing 10X Genomics data
  ☆42Updated 6 years ago
• cc2qe / vawk
  An awk-like VCF parser
  ☆56Updated last year
• NCBI-Hackathons / FlowBio
  A fast, easy way to present complex bioinformatics pipelines to biologists
  ☆11Updated 6 years ago
• Clinical-Genomics / MIP
  Mutation Identification Pipeline. Read the latest documentation:
  ☆44Updated last year
• ccmbioinfo / crg2
  Research pipeline for exploring clinically relevant genomic variants
  ☆15Updated 2 weeks ago
• AlistairNWard / vcfPytools
  vcf file manipulation
  ☆21Updated 9 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆71Updated this week
• dancooke / starfish
  Intersect multiple VCF files with haplotype awareness
  ☆25Updated 4 years ago
• ryanlayer / stix
  Structural Variant Index
  ☆72Updated 4 months ago
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• statgen / gotcloud
  Genomes on the Cloud, Mapping & Variant Calling Pipelines
  ☆34Updated 8 years ago
• statgenetics / seqspark
  SEQSpark documentation
  ☆18Updated 4 years ago
• openwdl / workflow-template-wdl
  ☆9Updated 6 months ago
• robinandeer / puzzle
  Variant caller GUI + genetic disease analysis
  ☆22Updated 4 years ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆43Updated last year
• bcgsc / mavis
  Merging, Annotation, Validation, and Illustration of Structural variants
  ☆75Updated last year
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆50Updated 4 months ago
• adimitromanolakis / sim1000G
  Simulation of rare and common variants based on 1000 genomes data
  ☆18Updated 3 years ago
• broadinstitute / cromshell
  CLI for interacting with Cromwell servers
  ☆53Updated last year
• churchill-lab / g2gtools
  Personal diploid genome creation and coordinate conversion
  ☆25Updated 3 weeks ago
• pughlab / bamgineer
  Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets
  ☆37Updated 4 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated this week
• sigven / gvanno
  Generic human DNA variant annotation pipeline
  ☆58Updated last year
• dantaki / SV2
  Support Vector Structural Variation Genotyper
  ☆58Updated 4 years ago