vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration
☆42Sep 9, 2024Updated 2 years ago
Alternatives and similar repositories for vcf2fhir
Users that are interested in vcf2fhir are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The FHIRForm framework for managing healthcare eForms☆17Oct 5, 2022Updated 3 years ago
- Documentation for Solor Knowledge Architecture and Knowledge Management Environment☆17Sep 1, 2022Updated 4 years ago
- Lightweight, portable variation registration and retrieval☆17Aug 24, 2026Updated 3 weeks ago
- Repository for development of the genomic module of the CDM.☆26Jun 14, 2019Updated 7 years ago
- This repository includes API to get ICD-10 codes from descriptions. The Model is a transformer based on BERT. The embeddings are being fi…☆18Jun 29, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- CQL to ELM translator packaged as a microservice.☆21May 6, 2026Updated 4 months ago
- Representation of Clinical Practice Guideline Recommendations in FHIR☆19Jun 10, 2026Updated 3 months ago
- An information model for representing variant annotations.☆28Updated this week
- Clinical Quality Language Ad-Hoc Evaluation Environment☆19Jun 22, 2026Updated 3 months ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆28Aug 21, 2024Updated 2 years ago
- GA4GH Variation Representation Python Implementation☆63Sep 1, 2026Updated 3 weeks ago
- Enterprise Data Exchange (DEX) is a new cloud-native centralized data ingestion, validation, and observation service scoped for common da…☆15Oct 2, 2024Updated last year
- SODAR Core: A Django-based framework for building scientific data management web apps☆13Updated this week
- Tools of Utilization and Cost in Healthcare☆14Nov 27, 2025Updated 9 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Converts DICOM Resources to FHIR Resources☆23Nov 18, 2020Updated 5 years ago
- A public reference implementation of HL7 FHIR Genomics Operations (http://build.fhir.org/ig/HL7/genomics-reporting/operations.html)☆34Updated this week
- REEV: Explanation and Evaluation of Variants☆11Apr 27, 2026Updated 4 months ago
- Streamlit template for building SMART on FHIR apps in the Cerner ecosystem.☆11Sep 22, 2023Updated 3 years ago
- An R package for evaluating phenotype algorithms.☆22Sep 4, 2026Updated 2 weeks ago
- A Variant Call Format reader for Python.☆58May 6, 2025Updated last year
- ☆10Jun 1, 2022Updated 4 years ago
- SULO: A simplified upper level ontology☆20Sep 7, 2026Updated 2 weeks ago
- Tool to identify concept in the OMOP Genomic vocabulary from VCF and other files as well as HGVS notations☆15May 6, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ⚙️ Simple GitHub CLI extension to list all (own|starred) repositories.☆17Jul 15, 2024Updated 2 years ago
- Python client for GA4GH htsget protocol☆15Nov 7, 2022Updated 3 years ago
- a place for GA4GH-related wiki pages☆17Aug 3, 2017Updated 9 years ago
- Scripts for running a sibling GWAS☆16Mar 16, 2022Updated 4 years ago
- Bioinformatics Hub RNAseq snakemake pipeline☆15Jan 30, 2018Updated 8 years ago
- Bridge2AI Standards Registry data models, API specification, and other documentation.☆16Updated this week
- ☆17Jan 24, 2023Updated 3 years ago
- Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically☆43Jun 19, 2026Updated 3 months ago
- Examples, template projects and documentation for the plugin API of SLIMS☆15May 2, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Reference server implementation for the GA4GH HTSget API standard.☆12Apr 8, 2026Updated 5 months ago
- FHIR Power creates Sentences from FHIR Resources or a Bundle of FHIR Resources to power Machine Learning Models, Vector Searches, and Bi…☆13Dec 13, 2023Updated 2 years ago
- A modern Python library for BaseSpace Clarity LIMS.☆15Oct 23, 2025Updated 10 months ago
- SUSHI (aka "SUSHI Unshortens Short Hand Inputs") is a reference implementation command-line interpreter/compiler for FHIR Shorthand (FSH)…☆188Updated this week
- Scripts used for generating Neale Lab UKB results☆19Oct 11, 2022Updated 3 years ago
- Using BCR and expression for sequence embedding☆28Jun 12, 2026Updated 3 months ago
- ☆18Nov 24, 2024Updated last year