vcf2fhir: a utility to convert VCF files into HL7 FHIR format for genomics-EHR integration
☆40Sep 9, 2024Updated last year
Alternatives and similar repositories for vcf2fhir
Users that are interested in vcf2fhir are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The FHIRForm framework for managing healthcare eForms☆17Oct 5, 2022Updated 3 years ago
- ☆12Feb 16, 2026Updated 2 months ago
- Lightweight, portable variation registration and retrieval☆16Updated this week
- Source for the HL7 Genomics work group's "Clinical Genomics-Reporting" FHIR implementation guide☆26Mar 31, 2026Updated last month
- HL7 FHIR client library. Sync and async crud operations against R4 FHIR servers. Resource validation & serialization☆20Apr 15, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Repository for development of the genomic module of the CDM.☆25Jun 14, 2019Updated 6 years ago
- Tool to identify concept in the OMOP Genomic vocabulary from VCF and other files as well as HGVS notations☆15May 6, 2024Updated last year
- UniCell Deconvolve Paper☆10Apr 25, 2023Updated 3 years ago
- CQL to ELM translator packaged as a microservice.☆20Mar 4, 2026Updated 2 months ago
- A Node.js framework for extracting mCODE FHIR resources☆23Dec 12, 2023Updated 2 years ago
- Representation of Clinical Practice Guideline Recommendations in FHIR☆18Updated this week
- An information model for representing variant annotations.☆27Apr 22, 2026Updated last week
- Documentation for Solor Knowledge Architecture and Knowledge Management Environment☆17Sep 1, 2022Updated 3 years ago
- This repository includes API to get ICD-10 codes from descriptions. The Model is a transformer based on BERT. The embeddings are being fi…☆18Jun 29, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SODAR Core: A Django-based framework for building scientific data management web apps☆13Updated this week
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆28Aug 21, 2024Updated last year
- REEV: Explanation and Evaluation of Variants☆11Apr 27, 2026Updated last week
- An R package for evaluating phenotype algorithms.☆22Apr 10, 2026Updated 3 weeks ago
- Streamlit template for building SMART on FHIR apps in the Cerner ecosystem.☆11Sep 22, 2023Updated 2 years ago
- KaBOB (Knowledge Base Of Biomedicine)☆11Nov 13, 2018Updated 7 years ago
- A Django-based FHIR server that uses MongoDB for FHIR resource storage☆10Apr 19, 2018Updated 8 years ago
- ☆13Oct 15, 2024Updated last year
- Python 3 library with good support for both reading and writing VCF☆112Oct 2, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package with well defined templates for most common pipelines☆18Jul 11, 2025Updated 9 months ago
- A public reference implementation of HL7 FHIR Genomics Operations (http://build.fhir.org/ig/HL7/genomics-reporting/operations.html)☆33Nov 14, 2025Updated 5 months ago
- Python client for GA4GH htsget protocol☆15Nov 7, 2022Updated 3 years ago
- Tools of Utilization and Cost in Healthcare☆13Nov 27, 2025Updated 5 months ago
- This is a repository of Swagger documents representing the HL7 FHIR REST API Implementation.☆11Aug 4, 2017Updated 8 years ago
- A library for calculating clinical quality measures☆28Jul 22, 2022Updated 3 years ago
- TrialMatchAI aims to leverage large language models (LLMs) to streamline patient matching with clinical trials based on unique patient ch…☆19Feb 10, 2026Updated 2 months ago
- Enterprise Data Exchange (DEX) is a new cloud-native centralized data ingestion, validation, and observation service scoped for common da…☆14Oct 2, 2024Updated last year
- Continuous administration of the Greene Lab's electronic scrum☆13Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Differential gene expression analysis on RNA-seq data☆13Apr 26, 2024Updated 2 years ago
- a place for GA4GH-related wiki pages☆17Aug 3, 2017Updated 8 years ago
- ☆17Jan 24, 2023Updated 3 years ago
- CNV analysis workflow code for the manuscript☆13Jun 22, 2020Updated 5 years ago
- BIH Cluster Wiki☆19Mar 27, 2026Updated last month
- The Genomics Tertiary Analysis and Machine Learning Using Amazon SageMaker solution creates a scalable environment in AWS to develop mach…☆11Jul 7, 2023Updated 2 years ago
- R on FHIR☆54Dec 10, 2020Updated 5 years ago