Alternatives and similar repositories for vcf2fhir

Users that are interested in vcf2fhir are comparing it to the libraries listed below

• phenopackets / phenopacket-schema
  Repository for the GA4GH phenopacket schema
  ☆88Updated 10 months ago
• OHDSI / Genomic-CDM
  Repository for development of the genomic module of the CDM.
  ☆22Updated 6 years ago
• NIH-NCPI / fhir-101
  🔥 FHIR 101 - A Practical Guide
  ☆42Updated 4 years ago
• HL7 / genomics-reporting
  Source for the HL7 Genomics work group's "Clinical Genomics-Reporting" FHIR implementation guide
  ☆23Updated last month
• callahantiff / OMOP2OBO
  OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
  ☆89Updated last year
• EBISPOT / DUO
  Ontology for consent codes and data use requirements
  ☆67Updated 2 years ago
• phenotips / phenotips
  The open-source version of PhenoTips is no longer maintained. PhenoTips makes it simple to record clinical findings observed in patients …
  ☆102Updated 3 years ago
• monarch-initiative / loinc2hpo
  Java library to map LOINC-encoded test results to Human Phenotype Ontology
  ☆31Updated last year
• hms-dbmi / hail-on-AWS-spot-instances
  An option to spin cost effective EMR clusters in AWS with Hail and JupyterNotebook installed
  ☆17Updated 5 years ago
• phenopackets / phenopacket-tools
  An app and library for building, conversion, and validation of GA4GH Phenopackets.
  ☆16Updated last month
• ohsu-comp-bio / g2p-aggregator
  Associations of genomic features, drugs and diseases
  ☆48Updated 2 years ago
• TheJacksonLaboratory / loinc2hpoAnnotation
  loinc2hpo Annotation Data
  ☆24Updated 3 years ago
• nmdp-bioinformatics / dash
  Data Standards Hackathon for NGS based typing.
  ☆14Updated 5 months ago
• obophenotype / human-phenotype-ontology
  Ontology for the description of human clinical features
  ☆315Updated last week
• monarch-initiative / mondo
  Mondo Disease Ontology
  ☆262Updated this week
• obophenotype / upheno
  The Unified Phenotype Ontology (uPheno) integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
  ☆79Updated last week
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆37Updated 2 years ago
• drseb / HPO-translations
  Internationalisation of the HPO content
  ☆19Updated 2 years ago
• dfci / matchminer
  MatchMiner: An open source computational platform for matching genomic profiles to precision cancer medicine clinical trials
  ☆44Updated 2 years ago
• opentargets / OnToma
  Map your disease and phenotype terms to the Open Targets platform ontology
  ☆21Updated last month
• transmart / transmartApp
  tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlati…
  ☆71Updated 7 years ago
• FHIR / genomics-operations
  A public reference implementation of HL7 FHIR Genomics Operations (http://build.fhir.org/ig/HL7/genomics-reporting/operations.html)
  ☆31Updated 3 weeks ago
• OHDSI / OMOP-Queries
  ☆28Updated 7 years ago
• cBioPortal / oncotree
  ☆45Updated 3 weeks ago
• EBISPOT / efo
  Github repo for the Experimental Factor Ontology (EFO)
  ☆58Updated last week
• monarch-initiative / pyphetools
  Python Phenopacket Tools
  ☆15Updated last week
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆58Updated this week
• OHDSI / OncologyWG
  Oncology Working Group Repository
  ☆57Updated this week
• ga4gh-discovery / data-connect
  Standard for describing and searching biomedical data developed by the Global Alliance for Genomics & Health.
  ☆24Updated last year
• uwrit / leaf
  Leaf Clinical Data Explorer
  ☆92Updated 4 months ago