Visual exploration of large genome interaction matrices with interactive small multiples.
☆13Dec 1, 2021Updated 4 years ago
Alternatives and similar repositories for hipiler
Users that are interested in hipiler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- Scalable Insets for HiGlass: a new technique for interactively exploring and navigating large numbers of annotated patterns in multiscale…☆16Dec 8, 2022Updated 3 years ago
- Script to automate differential expression analysis using DESeq2, edgeR or limma-voom☆20Aug 22, 2018Updated 8 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆22Jun 4, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A Python implementation for BH-FDR and HiCCUPS☆54Dec 29, 2025Updated 8 months ago
- ☆24May 26, 2020Updated 6 years ago
- snakemake pipeline for Hi-C post-processing☆22Jun 27, 2024Updated 2 years ago
- R package to evaluate the reproducibility of Hi-C data☆28Jun 23, 2023Updated 3 years ago
- Caleydo - Visualization for Molecular Biology☆61Dec 15, 2016Updated 9 years ago
- Vials is a Caleydo Web application for visualizing alternative splicing based on mRNAseq data.☆13Jan 8, 2018Updated 8 years ago
- ☆10Apr 24, 2024Updated 2 years ago
- MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data☆24Apr 24, 2017Updated 9 years ago
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆14Aug 30, 2025Updated last year
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆49Mar 26, 2025Updated last year
- Python bindings to UCSC BigWig and BigBed library☆36Aug 10, 2026Updated 3 weeks ago
- personal genome constructor☆11May 29, 2025Updated last year
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- Apify actor to run web spiders written in Python in the Scrapy library☆13Dec 11, 2022Updated 3 years ago
- A set of scripts and analysis commands to harvest Tweets and identify content of interest, meaningful search criteria, and value keywords…☆23Oct 28, 2019Updated 6 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆42May 18, 2026Updated 3 months ago
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆10Apr 30, 2019Updated 7 years ago
- Linearising and de-linearising functions for `nalgebra`'s `Point`s.☆14May 5, 2023Updated 3 years ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆12May 31, 2023Updated 3 years ago
- ☆12Oct 19, 2021Updated 4 years ago
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆10May 22, 2025Updated last year
- Python implementation of STATIS for analysis of several data tables☆12Aug 14, 2017Updated 9 years ago
- iOS inspired assistive touch menu built with React☆12Aug 10, 2021Updated 5 years ago
- Red-C data processing☆15Apr 18, 2023Updated 3 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Apr 20, 2026Updated 4 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆44Jan 31, 2024Updated 2 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 5 years ago
- RNA-Seq normalization and quantification pipeline☆12Nov 25, 2024Updated last year
- A comprehensive travel time dataset for the entire landmass of the world to the nearest town.☆16Oct 31, 2018Updated 7 years ago
- Gene-based test of allele-specific expression without requiring haplotype information☆16Mar 20, 2018Updated 8 years ago
- A modular Hi-C mapping pipeline☆105Dec 5, 2024Updated last year
- A visual exploration and hypothesis testing tool for 3D genomics☆13Apr 12, 2024Updated 2 years ago