flekschas / hipiler
Visual exploration of large genome interaction matrices with interactive small multiples.
☆13Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for hipiler
- Python NGS Repository☆9Updated 3 months ago
- User-friendly Bioinformatics Tools☆18Updated 3 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated 2 months ago
- Vials is a Caleydo Web application for visualizing alternative splicing based on mRNAseq data.☆13Updated 6 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated last year
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆54Updated last week
- Slides and demos from our SciPyConf 2019 talk☆13Updated 3 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 2 years ago
- ☆29Updated 4 months ago
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12Updated 6 months ago
- OLD REPOSITORY - Go to☆32Updated 6 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆42Updated last year
- GenomeFlow: A Graphical Tool for Modeling and Analyzing 3D Genome Structure☆21Updated 5 years ago
- A utility script to manage local docker instances of HiGlass☆23Updated last year
- Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆30Updated 7 years ago
- personal genome constructor☆9Updated 4 months ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.☆10Updated 8 months ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 6 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- Processing and plotting tools for genomics data☆20Updated last week
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 6 years ago
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Updated 4 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Updated 3 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 8 years ago
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆32Updated 2 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Updated last year
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 3 months ago