Visual exploration of large genome interaction matrices with interactive small multiples.
☆13Dec 1, 2021Updated 4 years ago
Alternatives and similar repositories for hipiler
Users that are interested in hipiler are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.☆15Apr 24, 2026Updated 3 months ago
- Scalable Insets for HiGlass: a new technique for interactively exploring and navigating large numbers of annotated patterns in multiscale…☆16Dec 8, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Script to automate differential expression analysis using DESeq2, edgeR or limma-voom☆20Aug 22, 2018Updated 7 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆22Jun 4, 2023Updated 3 years ago
- ☆23May 26, 2020Updated 6 years ago
- snakemake pipeline for Hi-C post-processing☆22Jun 27, 2024Updated 2 years ago
- R package to evaluate the reproducibility of Hi-C data☆28Jun 23, 2023Updated 3 years ago
- Caleydo - Visualization for Molecular Biology☆61Dec 15, 2016Updated 9 years ago
- Vials is a Caleydo Web application for visualizing alternative splicing based on mRNAseq data.☆13Jan 8, 2018Updated 8 years ago
- ☆10Apr 24, 2024Updated 2 years ago
- MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data☆24Apr 24, 2017Updated 9 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Enhanced Chromatin Occupancy (EChO)☆13Jan 8, 2020Updated 6 years ago
- ☆14Aug 30, 2025Updated 11 months ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆49Mar 26, 2025Updated last year
- ☆36Feb 22, 2023Updated 3 years ago
- Python bindings to UCSC BigWig and BigBed library☆36Updated this week
- personal genome constructor☆11May 29, 2025Updated last year
- Spectral and reproducibility analysis of Hi-C contact maps☆13Mar 18, 2021Updated 5 years ago
- Apify actor to run web spiders written in Python in the Scrapy library☆13Dec 11, 2022Updated 3 years ago
- A set of scripts and analysis commands to harvest Tweets and identify content of interest, meaningful search criteria, and value keywords…☆23Oct 28, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated 2 years ago
- Linearising and de-linearising functions for `nalgebra`'s `Point`s.☆14May 5, 2023Updated 3 years ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆12May 31, 2023Updated 3 years ago