firebb / parahmm
Parallel Implementation of HMM on Multicore Platform
☆25Updated last year
Related projects ⓘ
Alternatives and complementary repositories for parahmm
- ☆19Updated 4 years ago
- Rust implementation of probminhash, superminhash and hyperloglog sketching algorithms☆23Updated 2 months ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆16Updated 4 years ago
- Hardware go brrr bounded context suffix array construction algorithm☆17Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 2 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆56Updated 5 months ago
- A compressed, associative, exact, and weighted dictionary for k-mers.☆84Updated last month
- A fast, AVX2 and ARM Neon accelerated FM index library☆31Updated 3 months ago
- Bioinformatics Open Source Sequence machine☆33Updated last year
- Code accompanying the publication for compressed graph annotation☆13Updated 5 years ago
- ☆10Updated 3 years ago
- Online Principal Component Analysis☆22Updated 2 years ago
- CUDA implementation of hidden Markov model training and classification☆29Updated 6 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- Improved version of the Oxford Bioinformatics paper template☆12Updated 2 months ago
- FM-index for full-text search☆20Updated 3 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆81Updated 8 months ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Updated 3 months ago
- Parsing MHC nomenclature in the wild☆16Updated last month
- genome sequence alignment☆14Updated 5 years ago
- Analyzing RNA-Seq with approximate likelihood☆26Updated 3 years ago
- DartMinHash: Fast Sketching for Weighted Sets☆13Updated 3 years ago
- FMtree: A fast locating algorithm of FM-indexes for genomic data☆18Updated 7 years ago
- Python-interface C++ library for Bayesian phylogenetics via optimization☆38Updated 7 months ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆30Updated 3 years ago
- ☆19Updated 7 months ago
- Educational implementation of BWT and FM-index☆57Updated 6 years ago
- GFA parser in Rust☆29Updated last year
- dead Simple Queue - Slurm arrays for files with jobs in them.☆23Updated 2 years ago