Parallel Implementation of HMM on Multicore Platform
☆27Feb 24, 2023Updated 3 years ago
Alternatives and similar repositories for parahmm
Users that are interested in parahmm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Short-read assembler for bacterial genomics based on a de Bruijn graph written in Rust 🦅☆15Updated this week
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)☆24Mar 13, 2025Updated last year
- strain-level analysis tools☆41Oct 21, 2024Updated last year
- A definitive guide to build Tensorflow with Intel MKL support on Mac☆16Mar 28, 2018Updated 8 years ago
- Fast sequence distance estimates☆32Aug 24, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 7 months ago
- Code for the NeurIPS 2021 paper "Higher Order Kernel Mean Embeddings to Capture Filtrations of Stochastic Processes".☆10Oct 27, 2021Updated 4 years ago
- Self-contained, multi-threaded fasta/q parser☆50Mar 10, 2026Updated 5 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- A flexible and fast sgRNA counter from FASTQ Files☆12Jun 17, 2026Updated 2 months ago
- ☆13May 20, 2026Updated 3 months ago
- Atmel AVR simulator written in x86 assembly☆15Nov 29, 2024Updated last year
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆49Aug 19, 2026Updated 2 weeks ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- Optimized tensorflow wheels binaries build for macos☆13Jul 19, 2018Updated 8 years ago
- Genomewide Epistasis Analysis on Bacteria☆15Aug 7, 2026Updated 3 weeks ago
- BitSeq code☆16Jun 21, 2021Updated 5 years ago
- Just another minhash implementation.☆13Aug 26, 2026Updated last week
- bash scripts for the ELO of RU☆11Nov 30, 2022Updated 3 years ago
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Jul 24, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Read genomic data files (VCF, BCF, BGEN, PGEN, BED, H5AD, HDF5, DelayedArray) into R/Rcpp in chunks☆17Aug 20, 2026Updated last week
- A taxonomic classifier for shotgun metagenomics reads☆11Aug 26, 2026Updated last week
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆17Nov 19, 2025Updated 9 months ago
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.☆13Oct 15, 2021Updated 4 years ago
- Shared k-mer content between two genomes☆18Jun 21, 2023Updated 3 years ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last month
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 11 months ago
- Parsing MHC nomenclature in the wild☆21Updated this week
- ☆19May 10, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- mGEMS Genomic epidemiology with mixed samples☆17Sep 4, 2024Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆40Aug 7, 2026Updated 3 weeks ago
- MATLAB scripts for efficient template attacks☆15Apr 20, 2018Updated 8 years ago
- a programme for visualization of short sequence alignment and path navigation in graphical pan-genome☆26Jan 23, 2024Updated 2 years ago
- Index kmtricks bf matrices☆49Aug 25, 2026Updated last week
- Symbolic regression package using LLMs (via funsearch) and KANs☆17Jul 4, 2026Updated last month
- Recognizing common speech commands using Keras and Tensorflow.☆10Dec 17, 2018Updated 7 years ago