Parallel Implementation of HMM on Multicore Platform
β27Feb 24, 2023Updated 3 years ago
Alternatives and similar repositories for parahmm
Users that are interested in parahmm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Short-read assembler for bacterial genomics based on a de Bruijn graph written in Rust π¦β15Jul 9, 2026Updated 2 weeks ago
- Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)β24Mar 13, 2025Updated last year
- strain-level analysis toolsβ41Oct 21, 2024Updated last year
- A definitive guide to build Tensorflow with Intel MKL support on Macβ16Mar 28, 2018Updated 8 years ago
- Fast sequence distance estimatesβ30Jul 1, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- your friendly pangenome graph genotyperβ10Feb 6, 2023Updated 3 years ago
- Catalogue of pairwise alignment algorithms and benchmarksβ26Jan 6, 2026Updated 6 months ago
- Code for the NeurIPS 2021 paper "Higher Order Kernel Mean Embeddings to Capture Filtrations of Stochastic Processes".β10Oct 27, 2021Updated 4 years ago
- Self-contained, multi-threaded fasta/q parserβ50Mar 10, 2026Updated 4 months ago
- A rust wrapper for the spoa C++ partial order alignment libraryβ10Jun 11, 2025Updated last year
- A flexible and fast sgRNA counter from FASTQ Filesβ11Jun 17, 2026Updated last month
- β12May 20, 2026Updated 2 months ago
- Atmel AVR simulator written in x86 assemblyβ15Nov 29, 2024Updated last year
- Computation of average nucleotide identity with the use of MMseqs2β24Dec 11, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A minimal copy fastq and fasta reader built for parallel support and paired end processingβ45Jul 16, 2026Updated last week
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.β10Jan 31, 2025Updated last year
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.β15Feb 17, 2025Updated last year
- Optimized tensorflow wheels binaries build for macosβ13Jul 19, 2018Updated 8 years ago
- Genomewide Epistasis Analysis on Bacteriaβ15May 13, 2025Updated last year
- BitSeq codeβ16Jun 21, 2021Updated 5 years ago
- Just another minhash implementation.β12May 28, 2026Updated last month
- bash scripts for the ELO of RUβ11Nov 30, 2022Updated 3 years ago
- KmerCamelπ« provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.β20Updated this week
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Read genomic data files (VCF, BCF, BGEN, PGEN, BED, H5AD, HDF5, DelayedArray) into R/Rcpp in chunksβ16Updated this week
- A taxonomic classifier for shotgun metagenomics readsβ11Apr 4, 2025Updated last year
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inferenceβ17Nov 19, 2025Updated 8 months ago
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.β13Oct 15, 2021Updated 4 years ago
- Shared k-mer content between two genomesβ18Jun 21, 2023Updated 3 years ago
- Host depletion optimised for clinical metagenomic sequencing applicationsβ19Jul 9, 2026Updated 2 weeks ago
- A plant organellar Graphical Fragment Assembly toolkitβ16Sep 10, 2025Updated 10 months ago
- Parsing MHC nomenclature in the wildβ21Updated this week
- β19May 10, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- mGEMS Genomic epidemiology with mixed samplesβ17Sep 4, 2024Updated last year
- Mandrake πΏ/π¨βπ¬π¦ β Fast visualisation of the population structure of pathogens using Stochastic Cluster Embeddingβ40Mar 7, 2025Updated last year
- MATLAB scripts for efficient template attacksβ15Apr 20, 2018Updated 8 years ago
- a programme for visualization of short sequence alignment and path navigation in graphical pan-genomeβ26Jan 23, 2024Updated 2 years ago
- Index kmtricks bf matricesβ49Jul 6, 2026Updated 2 weeks ago
- Symbolic regression package using LLMs (via funsearch) and KANsβ16Jul 4, 2026Updated 2 weeks ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transformβ25Nov 20, 2025Updated 8 months ago