Anna-Kuosmanen / DAGChainer
DAGChainer - colinear chaining between a sequence and a DAG
☆10Updated 6 years ago
Alternatives and similar repositories for DAGChainer:
Users that are interested in DAGChainer are comparing it to the libraries listed below
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 2 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11Updated 7 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- nimble aligner that will map your reads to the references on a laptop☆12Updated 7 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- CoalHMM☆22Updated 11 years ago
- C++ library for parsing several formats in bioinformatics☆9Updated last year
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- SeqOthello supports fast coverage query and containment query.☆12Updated 5 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆13Updated 5 years ago
- Library for visualising genomic features in Python.☆15Updated 7 years ago
- For bluntifying overlapped GFAs☆13Updated 9 months ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆32Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- ☆12Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- Rust in bioinformatics and computational biology☆20Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- ☆10Updated 4 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆20Updated 6 years ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Updated last week
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Updated 8 months ago
- Variant call adjudication☆16Updated 10 months ago
- ☆14Updated 9 years ago