fastVEP: High-performance Variant Effect Predictor in Rust
☆94Jun 3, 2026Updated this week
Alternatives and similar repositories for fastVEP
Users that are interested in fastVEP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A nextflow pipeline for calling exome CNVs☆14May 28, 2026Updated last week
- Quick pre-QC knee plots for barcode based scRNAseq data☆13Dec 8, 2018Updated 7 years ago
- Nextflow workshop materials November 2025☆19Updated this week
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆18Feb 11, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Open Human Genome Library☆66Dec 22, 2025Updated 5 months ago
- QDNAseq.hg38: QDNAseq bin annotation for the human genome build hg38☆18Dec 16, 2025Updated 5 months ago
- Generic SDK and CLI for GA4GH API services☆15Feb 2, 2026Updated 4 months ago
- ☆13Mar 15, 2025Updated last year
- ☆45May 8, 2026Updated last month
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆24Sep 12, 2025Updated 8 months ago
- ☆14Jun 3, 2022Updated 4 years ago
- ☆48Sep 17, 2024Updated last year
- End-to-end structural variant post-processing: unify, merge, compare, and export from SV caller.☆41May 18, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 6 months ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆67May 29, 2026Updated last week
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 2 months ago
- ☆30Sep 11, 2025Updated 8 months ago
- Fasten toolkit, for streaming operations on fastq files☆82Oct 24, 2025Updated 7 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Jun 1, 2026Updated last week
- Data Science Operations (dso) command line tool☆47Jun 1, 2026Updated last week
- Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage se…☆18Oct 10, 2022Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- nf-test utility functions☆12May 22, 2026Updated 2 weeks ago
- Transfer coordinates across genomes☆23Apr 23, 2026Updated last month
- (WIP) best-practices workflow for rare disease☆64Jul 1, 2024Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆87Feb 23, 2026Updated 3 months ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 10 months ago
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 6 months ago
- ☆13Updated this week
- Filters for Next Generation Sequencing☆13Oct 31, 2024Updated last year
- A GA4GH Draft Beacon implementation☆11Oct 23, 2015Updated 10 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures☆29Jul 5, 2023Updated 2 years ago
- FRASER - Find RAre Splicing Events in RNA-seq☆55Feb 11, 2026Updated 3 months ago
- Faster than s3cp☆38Apr 20, 2022Updated 4 years ago
- Standard operating procedures for H3ABionet data processing and analyses☆11Aug 30, 2021Updated 4 years ago
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated last year
- highly-efficient & lightweight mutation signature matrix aggregation☆19Jan 12, 2022Updated 4 years ago