Cloud agnostic genomics analysis, scientific computation and storage platform
☆162Jun 30, 2026Updated this week
Alternatives and similar repositories for cloud-pipeline
Users that are interested in cloud-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high perform…☆170Jul 30, 2025Updated 11 months ago
- Web-based User Interface to run WDL bioinformatics workflows using Cromwell server☆13Aug 28, 2024Updated last year
- ☆19Mar 29, 2023Updated 3 years ago
- Cromwell output organizer☆13May 18, 2021Updated 5 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆34Mar 10, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Jun 18, 2024Updated 2 years ago
- ☆22Feb 5, 2025Updated last year
- The configuration and scripts for using spark within a Sun Grid Engine environment☆23Jun 30, 2014Updated 12 years ago
- Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)☆17May 29, 2020Updated 6 years ago
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 5 years ago
- This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions an…☆39Jan 11, 2024Updated 2 years ago
- This repo contains the knitr code for the paper: Gillespie, C. S., et al, 2010. Analysing yeast time course microarray data using BioCond…☆12Jan 25, 2016Updated 10 years ago
- ☆11Mar 11, 2018Updated 8 years ago
- Pipeline Builder is a JavaScript library for visualizing and constructing bioinformatics workflows, using Workflow Description Language (…☆60Apr 8, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Collection of codes used for quantum chemistry calculations, including Hartree-Fock, Coupled Cluster (CCSD), EOMCC, and other various thi…☆19May 17, 2021Updated 5 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆70Feb 10, 2020Updated 6 years ago
- Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.☆41Feb 13, 2026Updated 4 months ago
- Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning☆17Apr 6, 2021Updated 5 years ago
- Spark VCF data source implementation for Dataframes☆15Jul 15, 2022Updated 3 years ago
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 2 months ago
- VarDict Java port☆141Jan 5, 2024Updated 2 years ago
- Python library & CLI to create, view and edit PFB files☆14Apr 24, 2026Updated 2 months ago
- Reference files for running HipSTR with various organisms☆18Feb 3, 2018Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆13Jun 7, 2024Updated 2 years ago
- ☆29Feb 17, 2021Updated 5 years ago
- Resources and documentation for UK Biobank to OMOP CDM v5.3.1 conversion☆10Oct 20, 2020Updated 5 years ago
- Medical Genetics Sequence Analysis Pipelines☆91Updated this week
- CLI for interacting with Cromwell servers☆54Apr 2, 2024Updated 2 years ago
- [DEPRECATED] - A GA4GH Task Execution Service (TES) compatible implementation for Azure Compute☆18Sep 29, 2023Updated 2 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Jan 15, 2020Updated 6 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated 2 years ago
- ☆25Apr 29, 2018Updated 8 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Mutational Signature Comprehensive Analysis Toolkit☆16Apr 11, 2026Updated 2 months ago
- BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing☆31Sep 15, 2019Updated 6 years ago
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 2 years ago
- A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.☆39Apr 19, 2024Updated 2 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 7 years ago
- A workflow management system and web-based cluster front-end for high performance computing☆20Jun 23, 2022Updated 4 years ago
- Concordance and contamination estimator for tumor–normal pairs☆60Oct 22, 2024Updated last year