efficient multiset permutations
☆23Jun 30, 2023Updated 2 years ago
Alternatives and similar repositories for multipermute
Users that are interested in multipermute are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 8 months ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- generate multiset combinations (n multichoose k)☆27Apr 23, 2024Updated last year
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆11Jan 26, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Genome Assembly 102☆17Apr 23, 2025Updated 11 months ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- ☆18Jan 29, 2025Updated last year
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Feb 26, 2026Updated last month
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Course material for UBC Biol525D☆12Aug 15, 2019Updated 6 years ago
- ☆17Jan 5, 2021Updated 5 years ago
- Centromere mapping and annotation pipeline☆23Feb 28, 2026Updated 3 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Computational Pangenomics☆17Jun 1, 2022Updated 3 years ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆32Aug 18, 2025Updated 7 months ago
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 6 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆22Jul 30, 2025Updated 7 months ago
- ☆11Dec 9, 2022Updated 3 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- Genome browser hub for the T2T genomes and resources☆27Mar 11, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆30Mar 9, 2026Updated 2 weeks ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Dec 1, 2025Updated 3 months ago
- ☆30Mar 27, 2024Updated 2 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 3, 2022Updated 3 years ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- A simple C++17 header-only library for generating SVG plots☆10Mar 17, 2024Updated 2 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 10 months ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆13Mar 1, 2026Updated 3 weeks ago
- An experimental tool to find approximate max-cuts in a large graph☆10Apr 28, 2021Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- ☆11Feb 20, 2024Updated 2 years ago
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated last month
- profile basd Illumina pair-end Reads Simulator☆28Dec 18, 2023Updated 2 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago