ejohnson643 / EMBEDR
Statistical quality evaluation of dimensionality reduction algorithms
☆29Updated last year
Alternatives and similar repositories for EMBEDR:
Users that are interested in EMBEDR are comparing it to the libraries listed below
- University of Cambridge PhD thesis☆15Updated 4 years ago
- Diverse sampling for single-cell datasets☆16Updated 4 years ago
- A method for analyzing scATAC-seq experiments.☆27Updated last week
- ☆16Updated last year
- A python package for chromVAR☆27Updated last year
- Code and data used in The Great Repertoire Project☆30Updated 3 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆24Updated 2 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆43Updated 2 weeks ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆67Updated 2 weeks ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆35Updated 2 weeks ago
- ☆6Updated 4 years ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆17Updated this week
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- ☆16Updated 9 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆68Updated 3 months ago
- Toolkit for single-cell DNA methylation analysis.☆41Updated last week
- Benchmarking long-read RNA-seq analysis tools☆26Updated 3 weeks ago
- Molecular interactions inference from single-cell multi-omics data☆22Updated 4 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆47Updated 3 weeks ago
- Cooler demo using a Jupyter notebook Binder☆17Updated 4 years ago
- ☆19Updated 6 months ago
- Tools for working with BUS files☆94Updated 4 months ago
- ☆42Updated 4 months ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆86Updated 2 months ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated last year
- A network-based approach for exon set enrichment☆14Updated last month
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- Snakemake pipeline for microexon discovery and quantification☆20Updated last month
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆26Updated 2 years ago