edoughty / deepdive_genegene_app

Related projects ⓘ

Alternatives and complementary repositories for deepdive_genegene_app

• greenelab / pubtator
  Retrieve and process PubTator annotations
  ☆43Updated last year
• chop-dbhi / drug_word_embeddings
  development and intrinsic evaluation of drug related word embeddings using PubMed abstracts and DrugBank
  ☆14Updated 7 years ago
• biothings / mychem.info
  MyChem.info: A BioThings API for chemical/drug annotations
  ☆16Updated this week
• dhimmel / clintrials
  Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov
  ☆26Updated 8 years ago
• ncbi / BioConceptVec
  ☆40Updated 4 years ago
• ncbi-nlp / BioC-JSON
  Tool that converts between BioC XML files and BioC JSON files
  ☆16Updated 7 years ago
• bio2bel / drugbank
  A Bio2BEL package for DrugBank (https://www.drugbank.ca)
  ☆9Updated 3 years ago
• SmartDataAnalytics / BioKEEN
  A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…
  ☆46Updated 2 years ago
• enricoferrero / TargetPred
  In Silico Prediction of Novel Therapeutic Targets Using Gene – Disease Association Data
  ☆17Updated 6 years ago
• jakelever / biotext
  Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
  ☆13Updated 5 months ago
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 2 years ago
• GuiltyTargets / guiltytargets
  Target prioritization using network representation learning
  ☆11Updated 2 years ago
• xypan1232 / iDeepV
  iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.
  ☆10Updated 5 years ago
• OntoGene / PyBioC
  Python library for working with BioC files
  ☆13Updated 6 years ago
• adam-sam-brown / repoDB
  A Standard Database for Drug Repositioning
  ☆17Updated 7 years ago
• ayushnoori / metapaths
  Similarity search in heterogeneous knowledge graphs using meta paths.
  ☆24Updated last year
• michaelkyu / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆19Updated 5 years ago
• MaayanLab / SEP-L1000
  Website for visualizing predicted drug side-effects using L1000 data (http://maayanlab.net/SEP-L1000/)
  ☆10Updated 2 years ago
• bio-ontology-research-group / multi-drug-embedding
  Method for drug repurposing from knowledge graphs and literature
  ☆33Updated 4 years ago
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆31Updated 7 years ago
• greenelab / snorkeling
  Extracting biomedical relationships from literature with Snorkel 🏊
  ☆59Updated 3 years ago
• brianyiktaktsui / DEEP_NLP
  ☆12Updated 4 years ago
• sorgerlab / famplex
  Resources for grounding protein families and complexes from text and describing their hierarchical relationships.
  ☆18Updated 4 months ago
• johnbachman / famplex
  Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
  ☆12Updated 3 years ago
• bhi-kimlab / DeepFam
  Deep learning based alignment-free method for protein family modeling and prediction
  ☆17Updated 6 years ago
• ramzan1990 / sequence2vec
  ☆21Updated 7 years ago
• opentargets / OnToma
  Map your disease and phenotype terms to the Open Targets platform ontology
  ☆20Updated 2 months ago
• chenzxlabhzau / pyMeSHSim
  a module to calculate the MeSH similarity
  ☆25Updated 3 years ago
• gyorilab / indra_db
  A Database-based knowledge back-end built on and for INDRA. The INDRA Database is a service that can be set up by any user with their own…
  ☆16Updated last month
• DrugTargetOntology / DTO
  DTO ontology files
  ☆8Updated 6 years ago