buske / patient-similarity
Phenotype and genotype-based patient similarity
☆11Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for patient-similarity
- ☆40Updated 4 years ago
- Materials for the BIDMC datathon (Sat 29 Feb 2020)☆11Updated 5 months ago
- https://celehs.github.io/PheCAP/☆21Updated 3 years ago
- ☆51Updated 4 years ago
- Retrieve and process PubTator annotations☆43Updated last year
- MASI Lab Implementation of PheWAS in Python☆27Updated last week
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆36Updated last year
- Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records☆29Updated last year
- PhenoTagger☆54Updated 9 months ago
- Data structures and code to read/write BioC XML and Json.☆31Updated last year
- This repository contains data and code for the paper"Comparing deep learning and concept extraction based methods for patient phenotyping…☆21Updated 6 years ago
- Public release of the DeepPhe analytic software☆30Updated last year
- A framework for keeping biomedical text mining result up-to-date☆41Updated 4 years ago
- A Standard Database for Drug Repositioning☆17Updated 7 years ago
- For this project, I used publicly available Electronic Health Records (EHRs) datasets. The MIT Media Lab for Computational Physiology has…☆18Updated 8 months ago
- ☆23Updated 3 years ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆27Updated 3 years ago
- Semantic query and text mining tool☆22Updated last year
- Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction☆32Updated 5 years ago
- Corresponding code for experiments described in "Predicting Clinical Outcomes Across Changing Electronic Health Records." Presented at KD…☆11Updated 7 years ago
- A combined deep learning tool for automated recognition of human phenotype ontology☆20Updated last year
- R package with netDx software and data for examples☆12Updated last year
- Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases☆44Updated 3 months ago
- An R package for evaluating phenotype algorithms.☆17Updated last month
- ☆24Updated 3 years ago
- ☆10Updated 3 years ago
- A Python library to load and analyze the MIMIC III Critical Care Database☆27Updated last year
- Identification of Human Phenotype Entities☆10Updated 6 years ago
- Map your disease and phenotype terms to the Open Targets platform ontology☆20Updated 2 months ago
- Target prioritization using network representation learning☆11Updated 2 years ago